ENSDARG00000027082


Danio rerio
domainhmbox1asuperfamilydnabindinghomeoboxhepatocytenuclearfactorn-terminalhomeobox-likelambdarepressor-likedna-bindingregulationtranscriptiondna-templatednucleussequence-specific

Features
Gene ID: ENSDARG00000027082
  
Biological name :hmbox1a
  
Synonyms : hmbox1a / homeobox containing 1a
  
Possible biological names infered from orthology : HMBOX1 / homeobox containing 1 / Mus musculus homeobox containing 1 (Hmbox1), transcript variant 3, mRNA. / Q6NT76 / Q8BJA3
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 16298122
Gene end: 16324565
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000037056
NCBI entrez gene - 571508     See in Manteia.
RefSeq - NM_001030264
RefSeq Peptide - NP_001025435
swissprot - F1RBW1
ZFIN ID - ZDB-GENE-050913-89
Ensembl - ENSDARG00000027082
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMBOX1ENSGALG00000016633Gallus gallus
 HMBOX1ENSG00000147421Homo sapiens
 Hmbox1ENSMUSG00000021972Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CABZ01078261.1 / HMBOX1* / Q6NT76* / homeobox containing 1*ENSDARG0000010928770
zgc:91944ENSDARG0000003588744
hnf1ba / HNF1 homeobox Ba / HNF1B* / P35680* / P27889* / HNF1 homeobox B* / Hepatocyte nuclear factor 1-beta *ENSDARG0000000661520
hnf1a / HNF1 homeobox aENSDARG0000000947017
Q8UW00 / hnf1bb / HNF1 homeobox Bb / HNF1B* / P27889* / P35680* / HNF1 homeobox B* / Hepatocyte nuclear factor 1-beta *ENSDARG0000002229517


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006899  Hepatocyte nuclear factor 1, N-terminal
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic nitrogen compound metabolic processbiosynthetic processbiosynthetic processcellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic organic substance metabolic process
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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