ENSDARG00000029482


Danio rerio

Features
Gene ID: ENSDARG00000029482
  
Biological name :ush2a
  
Synonyms : ush2a / Usher syndrome 2A (autosomal recessive, mild)
  
Possible biological names infered from orthology : O75445 / Q2QI47 / usherin
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 29376854
Gene end: 29771639
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000080636
Ensembl peptide - ENSDARP00000154971
swissprot - Q1MTD2
ZFIN ID - ZDB-GENE-060503-794
Ensembl - ENSDARG00000029482
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000044419Gallus gallus
 ENSGALG00000009652Gallus gallus
 ENSGALG00000045563Gallus gallus
 USH2AENSG00000042781Homo sapiens
 Ush2aENSMUSG00000026609Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ntn1b / netrin 1b / NTN1* / O09118* / O95631* / netrin 1*ENSDARG000000225313
si:dkey-220k22.1ENSDARG000000354713
ntn5 / netrin 5 / Q3UQ22* / Q8WTR8*ENSDARG000000364223
ntn2 / netrin 2 / NTN3* / O00634* / Q3UUG6* / Q9R1A3* / Tbc1d24* / netrin 3*ENSDARG000000767483
si:ch211-158d24.2ENSDARG000000785363
ntn1a / netrin 1a / NTN1* / O09118* / O95631* / netrin 1*ENSDARG000001051123
ntng1a / netrin g1a / NTNG1* / Q8R4G0* / Q9Y2I2* / netrin G1*ENSDARG000000149732
si:ch211-57i17.5 / MEGF9* / Q8BH27* / Q9H1U4* / multiple EGF like domains 9* / Multiple epidermal growth factor-like domains protein 9 *ENSDARG000000413752
vav3b / vav 3 guanine nucleotide exchange factor b / NTNG1* / Q8R4G0* / Q9Y2I2* / netrin G1*ENSDARG000000737132
ntng2a / netrin g2a / NTNG2* / Q8R4F1* / Q96CW9* / netrin G2*ENSDARG000000773672
ntng2b / netrin g2b / NTNG2* / Q8R4F1* / Q96CW9* / netrin G2*ENSDARG000000871001


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR002049  Laminin EGF domain
 IPR003961  Fibronectin type III
 IPR006558  LamG-like jellyroll fold
 IPR008211  Laminin, N-terminal
 IPR008979  Galactose-binding-like domain superfamily
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR026915  Usherin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042462 eye photoreceptor cell development IGI
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009154 eye photoreceptor cell eye photoreceptor cell apoptotic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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