ENSDARG00000034823


Danio rerio

Features
Gene ID: ENSDARG00000034823
  
Biological name :copg2
  
Synonyms : coatomer protein complex, subunit gamma 2 / copg2 / Q9PUE4
  
Possible biological names infered from orthology : Coatomer subunit gamma-2 / Q9QXK3 / Q9UBF2
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 15983541
Gene end: 15996191
  
Corresponding Affymetrix probe sets: Dr.10319.1.S1_at (Zebrafish Array)   Dr.10319.2.S1_a_at (Zebrafish Array)   NM_130994_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000043659
NCBI entrez gene - 30187     See in Manteia.
RefSeq - NM_130994
RefSeq Peptide - NP_571069
swissprot - Q9PUE4
ZFIN ID - ZDB-GENE-000208-8
Ensembl - ENSDARG00000034823
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COPG2ENSGALG00000008144Gallus gallus
 COPG2ENSG00000158623Homo sapiens
 Copg2ENSMUSG00000025607Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002553  Clathrin/coatomer adaptor, adaptin-like, N-terminal
 IPR009028  Coatomer/calthrin adaptor appendage, C-terminal subdomain
 IPR011989  Armadillo-like helical
 IPR013040  Coatomer, gamma subunit, appendage, Ig-like subdomain
 IPR013041  Clathrin adaptor, appendage, Ig-like subdomain superfamily
 IPR016024  Armadillo-type fold
 IPR017106  Coatomer gamma subunit
 IPR032154  Coatomer subunit gamma, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA
 cellular_componentGO:0030126 COPI vesicle coat IEA
 cellular_componentGO:0030663 COPI-coated vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000019581 uso1 / USO1 vesicle transport factor / O60763* / Q9Z1Z0* / USO1 vesicle docking factor*  / complex / reaction
 ENSDARG00000002792 arcn1a / archain 1a / ARCN1* / P48444* / Q5XJY5* / archain 1* / Coatomer subunit delta *  / complex
 ENSDARG00000031214 arcn1b / archain 1b / ARCN1* / P48444* / Q5XJY5* / archain 1* / Coatomer subunit delta *  / complex
 ENSDARG00000027016 gbf1 / golgi brefeldin A resistant guanine nucleotide exchange factor 1 / Q92538*  / complex / reaction
 ENSDARG00000056557 copb1 / Q66HV4 / coatomer protein complex, subunit beta 1 / P53618* / Q9JIF7* / Coatomer subunit beta *  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr