ENSDARG00000035598


Danio rerio

Features
Gene ID: ENSDARG00000035598
  
Biological name :coro1ca
  
Synonyms : coro1ca / coronin, actin binding protein, 1Ca
  
Possible biological names infered from orthology : CORO1C / coronin 1C / Q9ULV4 / Q9WUM4
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 20319519
Gene end: 20419863
  
Corresponding Affymetrix probe sets: Dr.26522.1.A1_at (Zebrafish Array)   Dr.2901.1.S1_at (Zebrafish Array)   Dr.2901.1.S2_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000026454
Ensembl peptide - ENSDARP00000153466
swissprot - B0R0D7
ZFIN ID - ZDB-GENE-030114-6
Ensembl - ENSDARG00000035598
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CORO1CENSGALG00000004901Gallus gallus
 CORO1CENSG00000110880Homo sapiens
 Coro1cENSMUSG00000004530Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
coro1cb / coronin, actin binding protein, 1Cb / CORO1C* / Q9ULV4* / Q9WUM4* / coronin 1C*ENSDARG0000002119385
coro1a / coronin, actin binding protein, 1A / O89053* / P31146* / coronin 1A*ENSDARG0000005461064
coro6 / coronin 6 / Q6QEF8* / Q920M5*ENSDARG0000010227262
coro1b / coronin, actin binding protein, 1B / Q9BR76* / Q9WUM3* / coronin 1B*ENSDARG0000000866060
coro2a / coronin, actin binding protein, 2A / Q8C0P5* / Q92828* / coronin 2A*ENSDARG0000000521043
coro2bb / coronin, actin binding protein, 2BbENSDARG0000006360442
coro2ba / coronin, actin binding protein, 2Ba / CORO2B* / Q8BH44* / Q9UQ03* / coronin 2B*ENSDARG0000007944042
si:ch73-106g13.1 / CORO2A* / Q8C0P5* / Q92828* / coronin 2A*ENSDARG0000009596937
coro7 / coronin 7 / P57737* / Q9D2V7* / CORO7-PAM16* / CORO7-PAM16 readthrough*ENSDARG0000008961631


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR015048  Domain of unknown function DUF1899
 IPR015505  Coronin
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR027333  Coronin 1C


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030036 actin cytoskeleton organization IBA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001205 Meckel s cartilage Meckels cartilage fused with ceratohyal cartilage , abnormal
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 ZFA:0001306 pharyngeal arch pharyngeal arch morphology , abnormal
Show

 ZFA:0001611 pharyngeal arch 2 pharyngeal arch 2 morphology , abnormal
Show

 ZFA:0001612 pharyngeal arch 1 pharyngeal arch 1 fused with pharyngeal arch 2 , abnormal
pharyngeal arch 1 morphology , abnormal
Show

 ZFA:0009084 chondrocyte chondrocyte mislocalised , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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