ENSDARG00000036424


Danio rerio

Features
Gene ID: ENSDARG00000036424
  
Biological name :pcdh20
  
Synonyms : pcdh20 / protocadherin 20
  
Possible biological names infered from orthology : AL592490.1 / Q8BIZ0 / Q8N6Y1
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 42910904
Gene end: 42918971
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000052911
NCBI entrez gene - 100007362     See in Manteia.
swissprot - E7F9B5
Ensembl - ENSDARG00000036424
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000016934Gallus gallus
 AL592490.1ENSG00000197991Homo sapiens
 PCDH20ENSG00000280165Homo sapiens
 Pcdh20ENSMUSG00000050505Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh9 / protocadherin 9 / Q9HC56*ENSDARG0000006326438
pcdh11 / protocadherin 11 / Q9BZA7* / Q9BZA8* / PCDH11Y* / PCDH11X* / protocadherin 11 X-linked* / protocadherin 11 Y-linked*ENSDARG0000009865238
pcdh7b / protocadherin 7b / PCDH7* / O60245* / protocadherin 7*ENSDARG0000006061034
pcdh20 / protocadherin 20ENSDARG0000010191033
pcdh1b / protocadherin 1b / PCDH1* / Q08174* / protocadherin 1*ENSDARG0000003617532
pcdh1a / protocadherin 1a / PCDH1* / Q08174* / protocadherin 1*ENSDARG0000006272032
pcdh7a / protocadherin 7aENSDARG0000007889831
BX957322.3ENSDARG0000010735325
pcdh10b / protocadherin 10bENSDARG0000010282424
pcdh2aa1 / protocadherin 2 alpha a 1 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...ENSDARG0000003769523
pcdh2ab1 / protocadherin 2 alpha b 1 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...ENSDARG0000007190423
si:ch73-233f7.8ENSDARG0000010042423
pcdh1a3 / protocadherin 1 alpha 3 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y...ENSDARG0000010360223
pcdh2ab12 / protocadherin 2 alpha b 12 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* ...ENSDARG0000010408023
pcdh15b / protocadherin-related 15b / Q99PJ1* / PCDH15* / Q96QU1* / Protocadherin-15 * / protocadherin related 15*ENSDARG0000000812722
pcdh2aa15 / protocadherin 2 alpha a 15 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* ...ENSDARG0000008813622
si:dkeyp-115d7.2 / PCDHA1* / PCDHA5* / O88689* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y5H9* / Q9Y5I0* / ...ENSDARG0000008929722
pcdh2ab1 / pcdh2ab8 / protocadherin 2 alpha b 8 / PCDHA3* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* /...ENSDARG0000008987422
pcdh15a / protocadherin-related 15a / Q99PJ1* / PCDH15* / Q96QU1* / Protocadherin-15 * / protocadherin related 15*ENSDARG0000009825722
si:ch73-379j16.2 / PCDHA1* / PCDHA5* / O88689* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y5H9* / Q9Y5I0* / ...ENSDARG0000009953522


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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