ENSDARG00000036577


Danio rerio

Features
Gene ID: ENSDARG00000036577
  
Biological name :atp6v0cb
  
Synonyms : atp6v0cb / ATPase H+ transporting V0 subunit cb
  
Possible biological names infered from orthology : ATP6V0C / ATPase, H+ transporting, lysosomal V0 subunit C / ATPase H+ transporting V0 subunit c / P27449 / P63082
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 39158283
Gene end: 39175750
  
Corresponding Affymetrix probe sets: Dr.10576.2.A1_at (Zebrafish Array)   NM_205554_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000053138
NCBI entrez gene - 325402     See in Manteia.
RefSeq - NM_205554
RefSeq Peptide - NP_991117
swissprot - Q6P041
ZFIN ID - ZDB-GENE-030131-4127
Ensembl - ENSDARG00000036577
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATP6V0CENSGALG00000009229Gallus gallus
 P27449ENSG00000185883Homo sapiens
 P63082ENSMUSG00000024121Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
atp6v0ca / ATPase H+ transporting V0 subunit ca / P63082* / P27449* / ATP6V0C* / ATPase H+ transporting V0 subunit c* / ATPase, H+ transporting, lysosomal V0 subunit C*ENSDARG0000005785394


Protein motifs (from Interpro)
Interpro ID Name
 IPR000245  V-ATPase proteolipid subunit
 IPR002379  V-ATPase proteolipid subunit C-like domain
 IPR011555  V-ATPase proteolipid subunit C, eukaryotic


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0007042 lysosomal lumen acidification IBA
 biological_processGO:0015991 ATP hydrolysis coupled proton transport IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain IBA
 cellular_componentGO:0005773 vacuole IEA
 cellular_componentGO:0005774 vacuolar membrane IEA
 cellular_componentGO:0008021 synaptic vesicle IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 cellular_componentGO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEA
 cellular_componentGO:0033179 proton-transporting V-type ATPase, V0 domain IEA
 cellular_componentGO:0048786 presynaptic active zone IDA
 molecular_functionGO:0005245 voltage-gated calcium channel activity IMP
 molecular_functionGO:0015078 proton transmembrane transporter activity IEA
 molecular_functionGO:0046961 proton-transporting ATPase activity, rotational mechanism IBA


Pathways (from Reactome)
Pathway description
ROS, RNS production in phagocytes
Neutrophil degranulation
Insulin receptor recycling
Transferrin endocytosis and recycling
Ion channel transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000057853 atp6v0ca / ATPase H+ transporting V0 subunit ca / P63082* / P27449* / ATP6V0C* / ATPase H+ transporting V0 subunit c* / ATPase, H+ transporting, lysosomal V0 subunit C*  / complex
 ENSDARG00000036577 atp6v0cb / ATPase H+ transporting V0 subunit cb / P63082* / P27449* / ATP6V0C* / ATPase H+ transporting V0 subunit c* / ATPase, H+ transporting, lysosomal V0 subunit C*  / complex






 

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