ENSDARG00000037196


Danio rerio

Features
Gene ID: ENSDARG00000037196
  
Biological name :arid5b
  
Synonyms : arid5b / AT-rich interaction domain 5B / E7F888
  
Possible biological names infered from orthology : AT-rich interactive domain-containing protein 5B / Q14865 / Q8BM75
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 8168272
Gene end: 8385702
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000054091
Ensembl peptide - ENSDARP00000126937
swissprot - E7F888
swissprot - R4GEM4
ZFIN ID - ZDB-GENE-121214-272
Ensembl - ENSDARG00000037196
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARID5BENSGALG00000031534Gallus gallus
 ARID5BENSG00000150347Homo sapiens
 Arid5bENSMUSG00000019947Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:77151ENSDARG0000005430717
arid5a / AT rich interactive domain 5A (MRF1-like) / Q03989* / AT-rich interaction domain 5A*ENSDARG0000007712017
arid6 / AT-rich interaction domain 6ENSDARG0000006998812
arid4a / AT rich interactive domain 4A (RBP1-like) / P29374* / AT-rich interaction domain 4A*ENSDARG0000004387311
tomm20a / translocase of outer mitochondrial membrane 20 / Q4LE39* / ARID4B* / A2CG63* / AT-rich interaction domain 4B* / AT-rich interactive domain-containing protein 4B *ENSDARG0000009065611


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR030408  AT-rich interactive domain-containing protein 5B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity ISS
 biological_processGO:0060612 adipose tissue development ISS
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003713 transcription coactivator activity ISS
 molecular_functionGO:0044212 transcription regulatory region DNA binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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