ENSDARG00000069988


Danio rerio

Features
Gene ID: ENSDARG00000069988
  
Biological name :arid6
  
Synonyms : arid6 / AT-rich interaction domain 6
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 11244068
Gene end: 11251815
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000114989
Ensembl peptide - ENSDARP00000130251
NCBI entrez gene - 572528     See in Manteia.
RefSeq - NM_001080201
RefSeq Peptide - NP_001073670
swissprot - F1QH68
swissprot - A1L287
ZFIN ID - ZDB-GENE-070112-1882
Ensembl - ENSDARG00000069988
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
E7F888 / arid5b / AT-rich interaction domain 5B / Q8BM75* / Q14865* / AT-rich interactive domain-containing protein 5B *ENSDARG0000003719620
arid5a / AT rich interactive domain 5A (MRF1-like) / Q03989* / AT-rich interaction domain 5A*ENSDARG0000007712018
zgc:77151ENSDARG0000005430717
tomm20a / translocase of outer mitochondrial membrane 20 / Q4LE39* / ARID4B* / A2CG63* / AT-rich interaction domain 4B* / AT-rich interactive domain-containing protein 4B *ENSDARG0000009065613
arid4a / AT rich interactive domain 4A (RBP1-like) / P29374* / AT-rich interaction domain 4A*ENSDARG0000004387310


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR030408  AT-rich interactive domain-containing protein 5B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr