ENSDARG00000043873


Danio rerio

Features
Gene ID: ENSDARG00000043873
  
Biological name :arid4a
  
Synonyms : arid4a / AT rich interactive domain 4A (RBP1-like)
  
Possible biological names infered from orthology : AT-rich interaction domain 4A / P29374
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 11377970
Gene end: 11418553
  
Corresponding Affymetrix probe sets: Dr.12646.1.S1_at (Zebrafish Array)   Dr.5157.1.A1_at (Zebrafish Array)   NM_001031668_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000126363
Ensembl peptide - ENSDARP00000064411
Ensembl peptide - ENSDARP00000094005
Ensembl peptide - ENSDARP00000108603
NCBI entrez gene - 327404     See in Manteia.
RefSeq - NM_001031668
RefSeq - XM_005158631
RefSeq Peptide - NP_001026838
swissprot - F1QWQ1
swissprot - E7FFB4
swissprot - Q499A1
ZFIN ID - ZDB-GENE-050809-105
Ensembl - ENSDARG00000043873
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARID4AENSGALG00000012037Gallus gallus
 ARID4AENSG00000032219Homo sapiens
 Arid4aENSMUSG00000048118Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tomm20a / translocase of outer mitochondrial membrane 20 / Q4LE39* / ARID4B* / A2CG63* / AT-rich interaction domain 4B* / AT-rich interactive domain-containing protein 4B *ENSDARG0000009065631
E7F888 / arid5b / AT-rich interaction domain 5B / Q8BM75* / Q14865* / AT-rich interactive domain-containing protein 5B *ENSDARG000000371969
zgc:77151ENSDARG000000543077
arid6 / AT-rich interaction domain 6ENSDARG000000699885
arid5a / AT rich interactive domain 5A (MRF1-like) / Q03989* / AT-rich interaction domain 5A*ENSDARG000000771205


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR002999  Tudor domain
 IPR012603  RBB1NT
 IPR016197  Chromo-like domain superfamily
 IPR025995  RNA binding activity-knot of a chromodomain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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