ENSDARG00000037503


Danio rerio

Features
Gene ID: ENSDARG00000037503
  
Biological name :thoc2
  
Synonyms : thoc2 / THO complex 2
  
Possible biological names infered from orthology : B1AZI6 / BC005561 / cDNA sequence BC005561 / Q8NI27 / THO complex subunit 2
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 12391871
Gene end: 12486627
  
Corresponding Affymetrix probe sets: Dr.1596.1.A1_at (Zebrafish Array)   Dr.18021.1.S1_at (Zebrafish Array)   Dr.7899.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000054610
Ensembl peptide - ENSDARP00000099604
Ensembl peptide - ENSDARP00000141871
Ensembl peptide - ENSDARP00000097404
NCBI entrez gene - 368417     See in Manteia.
RefSeq - NM_001326547
RefSeq - XM_005157134
RefSeq Peptide - NP_001313476
swissprot - F1QXF4
swissprot - A0A0R4IXB9
swissprot - F1R5B5
swissprot - F1RCI0
ZFIN ID - ZDB-GENE-030616-54
Ensembl - ENSDARG00000037503
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 THOC2ENSGALG00000008507Gallus gallus
 THOC2ENSG00000125676Homo sapiens
 BC005561ENSMUSG00000079065Mus musculus
 Thoc2ENSMUSG00000037475Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR021418  THO complex, subunitTHOC2, C-terminal
 IPR021726  THO complex, subunitTHOC2, N-terminal
 IPR032302  THO complex subunit 2, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006406 mRNA export from nucleus IBA
 cellular_componentGO:0000445 THO complex part of transcription export complex IBA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver increased size , abnormal
liver quality , abnormal
liver hypoplastic , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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 ZFA:0009111 hepatocyte hepatocyte increased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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