ENSGALG00000008507


Gallus gallus

Features
Gene ID: ENSGALG00000008507
  
Biological name :THOC2
  
Synonyms : THOC2 / THO complex 2
  
Possible biological names infered from orthology : B1AZI6 / BC005561 / cDNA sequence BC005561 / Q8NI27 / THO complex subunit 2
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 15747591
Gene end: 15796700
  
Corresponding Affymetrix probe sets: Gga.12003.1.S1_at (Chicken Array)   Gga.12414.1.S1_s_at (Chicken Array)   Gga.20034.1.S1_at (Chicken Array)   GgaAffx.22610.1.S1_s_at (Chicken Array)   GgaAffx.22610.3.S1_x_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013843
Ensembl peptide - ENSGALP00000055540
NCBI entrez gene - 422361     See in Manteia.
RefSeq - XM_004940831
RefSeq - XM_015278625
RefSeq - XM_420332
swissprot - E1BSI5
swissprot - A0A1D5PRL3
Ensembl - ENSGALG00000008507
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 thoc2ENSDARG00000037503Danio rerio
 THOC2ENSG00000125676Homo sapiens
 BC005561ENSMUSG00000079065Mus musculus
 Thoc2ENSMUSG00000037475Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR021418  THO complex, subunitTHOC2, C-terminal
 IPR021726  THO complex, subunitTHOC2, N-terminal
 IPR032302  THO complex subunit 2, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006406 mRNA export from nucleus IBA
 biological_processGO:0016973 poly(A)+ mRNA export from nucleus IEA
 biological_processGO:0046784 viral mRNA export from host cell nucleus IEA
 biological_processGO:0048666 neuron development IEA
 biological_processGO:0048699 generation of neurons IEA
 cellular_componentGO:0000346 transcription export complex IEA
 cellular_componentGO:0000347 THO complex IEA
 cellular_componentGO:0000445 THO complex part of transcription export complex IBA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr