ENSDARG00000037773


Danio rerio

Features
Gene ID: ENSDARG00000037773
  
Biological name :rybpa
  
Synonyms : RING1 and YY1 binding protein a / rybpa
  
Possible biological names infered from orthology : Q8CCI5 / Q8N488 / RING1 and YY1 binding protein / RYBP
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 10762684
Gene end: 10786400
  
Corresponding Affymetrix probe sets: Dr.15019.1.S1_at (Zebrafish Array)   NM_201317_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000055037
NCBI entrez gene - 368248     See in Manteia.
RefSeq - NM_201317
RefSeq Peptide - NP_958474
swissprot - F1R1S9
ZFIN ID - ZDB-GENE-030424-3
Ensembl - ENSDARG00000037773
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000033025Gallus gallus
 RYBPENSG00000163602Homo sapiens
 RybpENSMUSG00000072872Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rybpb / RING1 and YY1 binding protein b / RYBP* / Q8CCI5* / Q8N488* / RING1 and YY1 binding protein*ENSDARG0000005345945
yaf2 / YY1 associated factor 2 / Q8IY57* / Q99LW6*ENSDARG0000001596627


Protein motifs (from Interpro)
Interpro ID Name
 IPR001876  Zinc finger, RanBP2-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR033774  Yaf2/RYBP C-terminal binding motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000006010 bmi1a / bmi1 polycomb ring finger oncogene 1a / BMI1* / P35226* / P25916* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polycomb ring finger*  / complex
 ENSDARG00000002971 phc1 / polyhomeotic homolog 1 / P78364* / Mus musculus polyhomeotic 1 (Phc1), transcript variant 5, mRNA.*  / complex
 ENSDARG00000013076 bmi1b / Q7T3E6 / bmi1 polycomb ring finger oncogene 1b / BMI1* / P25916* / P35226* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polyco...  / complex






 

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