ENSDARG00000006010


Danio rerio

Features
Gene ID: ENSDARG00000006010
  
Biological name :bmi1a
  
Synonyms : bmi1a / bmi1 polycomb ring finger oncogene 1a
  
Possible biological names infered from orthology : BMI1 / BMI1 proto-oncogene, polycomb ring finger / COMMD3-BMI1 / COMMD3-BMI1 readthrough / P25916 / P35226 / Polycomb complex protein BMI-1
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 17260001
Gene end: 17267235
  
Corresponding Affymetrix probe sets: Dr.5544.2.S1_a_at (Zebrafish Array)   NM_194366_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000066764
Ensembl peptide - ENSDARP00000114193
Ensembl peptide - ENSDARP00000106943
NCBI entrez gene - 321505     See in Manteia.
RefSeq - NM_194366
RefSeq Peptide - NP_919347
swissprot - E9QBX8
swissprot - A0A0R4I9F7
ZFIN ID - ZDB-GENE-030131-224
Ensembl - ENSDARG00000006010
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BMI1ENSGALG00000041267Gallus gallus
 BMI1ENSG00000168283Homo sapiens
 COMMD3-BMI1ENSG00000269897Homo sapiens
 Bmi1ENSMUSG00000026739Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
bmi1b / Q7T3E6 / bmi1 polycomb ring finger oncogene 1b / BMI1* / P25916* / P35226* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polyco...ENSDARG0000001307677
pcgf1 / polycomb group ring finger 1 / Q8R023* / Q9BSM1* / Polycomb group RING finger protein 1 *ENSDARG0000000124926
Q1JPS1 / pcgf5b / polycomb group ring finger 5b / PCGF5* / Q3UK78* / Q86SE9* / polycomb group ring finger 5* / Polycomb group RING finger protein 5 *ENSDARG0000005238820
pcgf6 / polycomb group ring finger 6 / Q99NA9* / Q9BYE7* / Polycomb group RING finger protein 6 *ENSDARG0000006968120
pcgf5a / B3DK16 / polycomb group ring finger 5a / PCGF5* / Q86SE9* / Q3UK78* / polycomb group ring finger 5* / Polycomb group RING finger protein 5 *ENSDARG0000007100720


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR032443  RAWUL domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
SUMOylation of DNA damage response and repair proteins
SUMOylation of transcription cofactors
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000044267 sumo1 / Q7SZR5 / small ubiquitin-like modifier 1 / P63166* / P63165* / Small ubiquitin-related modifier 1 *  / complex
 ENSDARG00000037773 rybpa / RING1 and YY1 binding protein a / RYBP* / Q8CCI5* / Q8N488* / RING1 and YY1 binding protein*  / complex
 ENSDARG00000002971 phc1 / polyhomeotic homolog 1 / P78364* / Mus musculus polyhomeotic 1 (Phc1), transcript variant 5, mRNA.*  / complex






 

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