ENSDARG00000071007


Danio rerio

Features
Gene ID: ENSDARG00000071007
  
Biological name :pcgf5a
  
Synonyms : B3DK16 / pcgf5a / polycomb group ring finger 5a
  
Possible biological names infered from orthology : PCGF5 / polycomb group ring finger 5 / Polycomb group RING finger protein 5 / Q3UK78 / Q86SE9
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 23434211
Gene end: 23446760
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000095486
NCBI entrez gene - 562327     See in Manteia.
RefSeq - NM_001128712
RefSeq Peptide - NP_001122184
swissprot - B3DK16
ZFIN ID - ZDB-GENE-080723-33
Ensembl - ENSDARG00000071007
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCGF5ENSGALG00000006502Gallus gallus
 PCGF5ENSG00000180628Homo sapiens
 Pcgf5ENSMUSG00000024805Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q1JPS1 / pcgf5b / polycomb group ring finger 5b / PCGF5* / Q3UK78* / Q86SE9* / polycomb group ring finger 5* / Polycomb group RING finger protein 5 *ENSDARG0000005238880
pcgf1 / polycomb group ring finger 1 / Q8R023* / Q9BSM1* / Polycomb group RING finger protein 1 *ENSDARG0000000124937
pcgf6 / polycomb group ring finger 6 / Q99NA9* / Q9BYE7* / Polycomb group RING finger protein 6 *ENSDARG0000006968132
bmi1b / Q7T3E6 / bmi1 polycomb ring finger oncogene 1b / BMI1* / P25916* / P35226* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polyco...ENSDARG0000001307629
bmi1a / bmi1 polycomb ring finger oncogene 1a / BMI1* / P35226* / P25916* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polycomb ring finger*ENSDARG0000000601028


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR032443  RAWUL domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0031519 PcG protein complex ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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