ENSDARG00000001249


Danio rerio

Features
Gene ID: ENSDARG00000001249
  
Biological name :pcgf1
  
Synonyms : pcgf1 / polycomb group ring finger 1
  
Possible biological names infered from orthology : Polycomb group RING finger protein 1 / Q8R023 / Q9BSM1
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 5394630
Gene end: 5407555
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000001039
Ensembl peptide - ENSDARP00000136179
swissprot - A0A0H2UKC5
swissprot - A0A0R4INL3
ZFIN ID - ZDB-GENE-030616-605
Ensembl - ENSDARG00000001249
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCGF1ENSG00000115289Homo sapiens
 Pcgf1ENSMUSG00000069678Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcgf5a / B3DK16 / polycomb group ring finger 5a / PCGF5* / Q86SE9* / Q3UK78* / polycomb group ring finger 5* / Polycomb group RING finger protein 5 *ENSDARG0000007100729
bmi1a / bmi1 polycomb ring finger oncogene 1a / BMI1* / P35226* / P25916* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polycomb ring finger*ENSDARG0000000601028
bmi1b / Q7T3E6 / bmi1 polycomb ring finger oncogene 1b / BMI1* / P25916* / P35226* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polyco...ENSDARG0000001307628
pcgf6 / polycomb group ring finger 6 / Q99NA9* / Q9BYE7* / Polycomb group RING finger protein 6 *ENSDARG0000006968128
Q1JPS1 / pcgf5b / polycomb group ring finger 5b / PCGF5* / Q3UK78* / Q86SE9* / polycomb group ring finger 5* / Polycomb group RING finger protein 5 *ENSDARG0000005238827


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR032443  RAWUL domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000075 spinal cord spinal cord curved , abnormal
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 ZFA:0000093 blastomere blastomere decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001216 splanchnocranium splanchnocranium ossification delayed , abnormal
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 ZFA:0001617 otolith otolith absent , abnormal
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 ZFA:0001652 head muscle head muscle muscle fiber development delayed , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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