ENSDARG00000037845


Danio rerio

Features
Gene ID: ENSDARG00000037845
  
Biological name :col9a3
  
Synonyms : col9a3 / collagen, type IX, alpha 3
  
Possible biological names infered from orthology : collagen type IX alpha 3 chain / Q14050
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 495514
Gene end: 524780
  
Corresponding Affymetrix probe sets: Dr.3407.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000055138
NCBI entrez gene - 567110     See in Manteia.
RefSeq - NM_001305573
RefSeq Peptide - NP_001292502
swissprot - F1R1F1
ZFIN ID - ZDB-GENE-030131-9799
Ensembl - ENSDARG00000037845
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL9A3ENSGALG00000005628Gallus gallus
 COL9A3ENSG00000092758Homo sapiens
 Col9a3ENSMUSG00000027570Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col9a1b / collagen, type IX, alpha 1b / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000003148347
col9a2 / procollagen, type IX, alpha 2 / Q14055* / collagen type IX alpha 2 chain*ENSDARG0000002449245
col9a1a / collagen, type IX, alpha 1a / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000007369945
zgc:113232ENSDARG0000004011829
si:dkeyp-44a8.4 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000009533923
si:ch211-160j14.3 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000008907821


Protein motifs (from Interpro)
Interpro ID Name
 IPR003979  Tropoelastin
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000024492 col9a2 / procollagen, type IX, alpha 2 / Q14055* / collagen type IX alpha 2 chain*  / complex
 ENSDARG00000031483 col9a1b / collagen, type IX, alpha 1b / COL9A1* / P20849* / collagen type IX alpha 1 chain*  / complex






 

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