ENSDARG00000073699


Danio rerio

Features
Gene ID: ENSDARG00000073699
  
Biological name :col9a1a
  
Synonyms : col9a1a / collagen, type IX, alpha 1a
  
Possible biological names infered from orthology : COL9A1 / collagen type IX alpha 1 chain / P20849
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 11274940
Gene end: 11301357
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000097619
Ensembl peptide - ENSDARP00000145851
swissprot - F1QTQ2
ZFIN ID - ZDB-GENE-080721-25
Ensembl - ENSDARG00000073699
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL9A1ENSGALG00000015970Gallus gallus
 COL9A1ENSG00000112280Homo sapiens
 Col9a1ENSMUSG00000026147Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col9a1b / collagen, type IX, alpha 1b / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000003148364
col9a2 / procollagen, type IX, alpha 2 / Q14055* / collagen type IX alpha 2 chain*ENSDARG0000002449248
col9a3 / collagen, type IX, alpha 3 / Q14050* / collagen type IX alpha 3 chain*ENSDARG0000003784545
zgc:113232ENSDARG0000004011831
si:dkeyp-44a8.4 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000009533923
si:ch211-160j14.3 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000008907820


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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