ENSDARG00000040118


Danio rerio

Features
Gene ID: ENSDARG00000040118
  
Biological name :zgc:113232
  
Synonyms : zgc:113232
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 38360002
Gene end: 38389883
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000116602
Ensembl peptide - ENSDARP00000081780
NCBI entrez gene - 541546     See in Manteia.
RefSeq - NM_001014359
RefSeq Peptide - NP_001014381
swissprot - A8DZD1
swissprot - Q58EP8
ZFIN ID - ZDB-GENE-050327-86
Ensembl - ENSDARG00000040118
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col9a1b / collagen, type IX, alpha 1b / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000003148333
col9a1a / collagen, type IX, alpha 1a / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000007369933
col9a2 / procollagen, type IX, alpha 2 / Q14055* / collagen type IX alpha 2 chain*ENSDARG0000002449232
col9a3 / collagen, type IX, alpha 3 / Q14050* / collagen type IX alpha 3 chain*ENSDARG0000003784531
si:dkeyp-44a8.4 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000009533921
si:ch211-160j14.3 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000008907820


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr