ENSDARG00000039613


Danio rerio

Features
Gene ID: ENSDARG00000039613
  
Biological name :poll
  
Synonyms : poll / polymerase (DNA directed), lambda
  
Possible biological names infered from orthology : DNA polymerase lambda / Q9QXE2 / Q9UGP5
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 31657842
Gene end: 31672343
  
Corresponding Affymetrix probe sets: Dr.6031.1.A1_at (Zebrafish Array)   Dr.6031.2.A1_at (Zebrafish Array)   NM_213243_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000150421
Ensembl peptide - ENSDARP00000057879
NCBI entrez gene - 406697     See in Manteia.
RefSeq - NM_213243
RefSeq Peptide - NP_998408
swissprot - B8JIE9
ZFIN ID - ZDB-GENE-040426-2712
Ensembl - ENSDARG00000039613
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLLENSGALG00000007753Gallus gallus
 POLLENSG00000166169Homo sapiens
 PollENSMUSG00000025218Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
polm / polymerase (DNA directed), mu / Q9JIW4* / Q9NP87* / DNA polymerase mu*ENSDARG0000010347022
dntt / deoxynucleotidyltransferase, terminal / P04053* / DNA nucleotidylexotransferase*ENSDARG0000010479221
polb / polymerase (DNA directed), beta / P06746* / Q8K409* / DNA polymerase beta*ENSDARG0000000374920


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR001726  DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu
 IPR002008  DNA polymerase family X, beta-like
 IPR002054  DNA-directed DNA polymerase X
 IPR010996  DNA polymerase beta-like, N-terminal domain
 IPR018944  DNA polymerase lambda, fingers domain
 IPR019843  DNA polymerase family X, binding site
 IPR022312  DNA polymerase family X
 IPR028207  DNA polymerase beta, palm domain
 IPR029398  DNA polymerase beta, thumb domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006259 DNA metabolic process IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0071897 DNA biosynthetic process IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003887 DNA-directed DNA polymerase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0034061 DNA polymerase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nonhomologous End-Joining (NHEJ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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