ENSDARG00000103470


Danio rerio

Features
Gene ID: ENSDARG00000103470
  
Biological name :polm
  
Synonyms : polm / polymerase (DNA directed), mu
  
Possible biological names infered from orthology : DNA polymerase mu / Q9JIW4 / Q9NP87
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 45015225
Gene end: 45029041
  
Corresponding Affymetrix probe sets: Dr.24313.1.S1_at (Zebrafish Array)   NM_200248_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000141586
NCBI entrez gene - 393218     See in Manteia.
RefSeq - NM_200248
RefSeq Peptide - NP_956542
swissprot - Q5IBN3
ZFIN ID - ZDB-GENE-040426-911
Ensembl - ENSDARG00000103470
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLMENSG00000122678Homo sapiens
 PolmENSMUSG00000020474Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dntt / deoxynucleotidyltransferase, terminal / P04053* / DNA nucleotidylexotransferase*ENSDARG0000010479242
poll / polymerase (DNA directed), lambda / Q9QXE2* / Q9UGP5* / DNA polymerase lambda*ENSDARG0000003961324
polb / polymerase (DNA directed), beta / P06746* / Q8K409* / DNA polymerase beta*ENSDARG0000000374917


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR001726  DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu
 IPR002054  DNA-directed DNA polymerase X
 IPR010996  DNA polymerase beta-like, N-terminal domain
 IPR018944  DNA polymerase lambda, fingers domain
 IPR019843  DNA polymerase family X, binding site
 IPR027249  DNA-directed DNA/RNA polymerase mu
 IPR028207  DNA polymerase beta, palm domain
 IPR029398  DNA polymerase beta, thumb domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006259 DNA metabolic process IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0071897 DNA biosynthetic process IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003887 DNA-directed DNA polymerase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0034061 DNA polymerase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nonhomologous End-Joining (NHEJ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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