ENSDARG00000040727


Danio rerio

Features
Gene ID: ENSDARG00000040727
  
Biological name :tfb1m
  
Synonyms : tfb1m / transcription factor B1, mitochondrial
  
Possible biological names infered from orthology : Dimethyladenosine transferase 1, mitochondrial / Q8JZM0 / Q8WVM0
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 49220126
Gene end: 49280428
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000059657
Ensembl peptide - ENSDARP00000124704
Ensembl peptide - ENSDARP00000138823
NCBI entrez gene - 767802     See in Manteia.
RefSeq - NM_001076769
RefSeq Peptide - NP_001070237
swissprot - F1QQ24
swissprot - A0A0R4IU10
swissprot - F8W2J7
ZFIN ID - ZDB-GENE-060929-1010
Ensembl - ENSDARG00000040727
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TFB1MENSGALG00000013647Gallus gallus
 TFB1MENSG00000029639Homo sapiens
 Tfb1mENSMUSG00000036983Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dimt1l / DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) / DIMT1* / Q9UNQ2* / Q9D0D4* / Probable dimethyladenosine transferase * / DIM1 dimethyladenosine transferase 1 homolog*ENSDARG0000000505724


Protein motifs (from Interpro)
Interpro ID Name
 IPR001737  Ribosomal RNA adenine methyltransferase KsgA/Erm
 IPR011530  Ribosomal RNA adenine dimethylase
 IPR020598  Ribosomal RNA adenine methylase transferase, N-terminal
 IPR023165  rRNA adenine dimethylase-like
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000154 rRNA modification IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0031167 rRNA methylation IEA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008649 rRNA methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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