ENSDARG00000041546


Danio rerio

Features
Gene ID: ENSDARG00000041546
  
Biological name :gypc
  
Synonyms : glycophorin C (Gerbich blood group) / gypc
  
Possible biological names infered from orthology : glycophorin C / P04921 / Q78HU7
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 23665777
Gene end: 23718614
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000060904
Ensembl peptide - ENSDARP00000149175
NCBI entrez gene - 335987     See in Manteia.
RefSeq - NM_001005394
RefSeq Peptide - NP_001005394
swissprot - Q6XFR2
ZFIN ID - ZDB-GENE-030131-7930
Ensembl - ENSDARG00000041546
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GYPCENSGALG00000011566Gallus gallus
 GYPCENSG00000136732Homo sapiens
 GypcENSMUSG00000090523Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003585  Neurexin/syndecan/glycophorin C


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IBA
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IBA
 biological_processGO:0008037 cell recognition IBA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005913 cell-cell adherens junction IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0019897 extrinsic component of plasma membrane IDA
 molecular_functionGO:0005102 signaling receptor binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IBA
 molecular_functionGO:0050839 cell adhesion molecule binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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