ENSDARG00000042508


Danio rerio

Features
Gene ID: ENSDARG00000042508
  
Biological name :ubr3
  
Synonyms : F1QJX5 / ubiquitin protein ligase E3 component n-recognin 3 / ubr3
  
Possible biological names infered from orthology : Q5U430 / Q6ZT12 / ubiquitin protein ligase E3 component n-recognin 3 (putative)
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 3898132
Gene end: 4018452
  
Corresponding Affymetrix probe sets: Dr.8532.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111269
Ensembl peptide - ENSDARP00000062335
Ensembl peptide - ENSDARP00000156490
NCBI entrez gene - 553247     See in Manteia.
swissprot - A0A240I9X0
swissprot - F1QJX5
ZFIN ID - ZDB-GENE-030131-1473
Ensembl - ENSDARG00000042508
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000035605Gallus gallus
 ENSGALG00000009608Gallus gallus
 UBR3ENSG00000144357Homo sapiens
 Ubr3ENSMUSG00000044308Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ubr2 / ubiquitin protein ligase E3 component n-recognin 2 / Q6WKZ8* / Q8IWV8*ENSDARG0000007016418
LO018474.1 / UBR1* / Q8IWV7* / ubiquitin protein ligase E3 component n-recognin 1*ENSDARG0000010430611
ubr1 / ubiquitin protein ligase E3 component n-recognin 1 / O70481* / Q8IWV7*ENSDARG000000604804


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003126  Zinc finger, UBR-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0048592 eye morphogenesis IMP
 biological_processGO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000050 optic vesicle optic vesicle epithelium morphology , abnormal
optic vesicle epithelium disorganized , abnormal
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 ZFA:0000155 somite somite morphology , abnormal
somite U-shaped , abnormal
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 ZFA:0001094 whole organism whole organism has extra parts of type Rohon-Beard neuron , abnormal
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 ZFA:0001678 immature eye immature eye decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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