ENSDARG00000104306


Danio rerio

Features
Gene ID: ENSDARG00000104306
  
Biological name :LO018474.1
  
Synonyms : LO018474.1
  
Possible biological names infered from orthology : O70481 / Q8IWV7 / ubiquitin protein ligase E3 component n-recognin 1 / UBR1
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 39834947
Gene end: 39868435
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000139363
swissprot - A0A0G2L3N5
Ensembl - ENSDARG00000104306
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UBR1ENSGALG00000009249Gallus gallus
 UBR1ENSG00000159459Homo sapiens
 Ubr1ENSMUSG00000027272Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ubr2 / ubiquitin protein ligase E3 component n-recognin 2 / Q6WKZ8* / Q8IWV8*ENSDARG0000007016446
ubr3 / F1QJX5 / ubiquitin protein ligase E3 component n-recognin 3 / Q6ZT12* / Q5U430* / ubiquitin protein ligase E3 component n-recognin 3 (putative)*ENSDARG0000004250819
ubr1 / ubiquitin protein ligase E3 component n-recognin 1 / O70481* / Q8IWV7*ENSDARG000000604800


Protein motifs (from Interpro)
Interpro ID Name
 IPR011991  ArsR-like helix-turn-helix domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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