ENSDARG00000060480


Danio rerio

Features
Gene ID: ENSDARG00000060480
  
Biological name :ubr1
  
Synonyms : ubiquitin protein ligase E3 component n-recognin 1 / ubr1
  
Possible biological names infered from orthology : O70481 / Q8IWV7
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 39790388
Gene end: 39817543
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000124166
swissprot - F8W4R2
ZFIN ID - ZDB-GENE-091110-2
Ensembl - ENSDARG00000060480
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UBR1ENSGALG00000009249Gallus gallus
 UBR1ENSG00000159459Homo sapiens
 Ubr1ENSMUSG00000027272Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ubr2 / ubiquitin protein ligase E3 component n-recognin 2 / Q6WKZ8* / Q8IWV8*ENSDARG0000007016446
ubr3 / F1QJX5 / ubiquitin protein ligase E3 component n-recognin 3 / Q6ZT12* / Q5U430* / ubiquitin protein ligase E3 component n-recognin 3 (putative)*ENSDARG0000004250818
LO018474.1 / UBR1* / Q8IWV7* / ubiquitin protein ligase E3 component n-recognin 1*ENSDARG000001043060


Protein motifs (from Interpro)
Interpro ID Name
 IPR003126  Zinc finger, UBR-type
 IPR003769  Adaptor protein ClpS, core
 IPR014719  Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030163 protein catabolic process IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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