ENSGALG00000009249


Gallus gallus

Features
Gene ID: ENSGALG00000009249
  
Biological name :UBR1
  
Synonyms : ubiquitin protein ligase E3 component n-recognin 1 / UBR1
  
Possible biological names infered from orthology : O70481 / Q8IWV7
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 25964150
Gene end: 26042047
  
Corresponding Affymetrix probe sets: Gga.14739.1.S1_s_at (Chicken Array)   GgaAffx.21697.1.S1_at (Chicken Array)   GgaAffx.22849.1.S1_at (Chicken Array)   GgaAffx.22849.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015034
NCBI entrez gene - 423242     See in Manteia.
RefSeq - XM_015287098
RefSeq - XM_015287099
swissprot - F1P5I1
Ensembl - ENSGALG00000009249
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LO018474.1ENSDARG00000104306Danio rerio
 ubr1ENSDARG00000060480Danio rerio
 UBR1ENSG00000159459Homo sapiens
 Ubr1ENSMUSG00000027272Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
UBR2 / ubiquitin protein ligase E3 component n-recognin 2 / Q6WKZ8* / Q8IWV8*ENSGALG0000000990646
UBR3* / Q5U430* / Q6ZT12* / ubiquitin protein ligase E3 component n-recognin 3* / ubiquitin protein ligase E3 component n-recognin 3 (putative)*ENSGALG000000096089
UBR3* / Q5U430* / Q6ZT12* / ubiquitin protein ligase E3 component n-recognin 3* / ubiquitin protein ligase E3 component n-recognin 3 (putative)*ENSGALG000000356057


Protein motifs (from Interpro)
Interpro ID Name
 IPR003126  Zinc finger, UBR-type
 IPR003769  Adaptor protein ClpS, core
 IPR011991  ArsR-like helix-turn-helix domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR014719  Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030163 protein catabolic process IEA
 biological_processGO:0032007 negative regulation of TOR signaling IEA
 biological_processGO:0071233 cellular response to leucine IEA
 biological_processGO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IEA
 cellular_componentGO:0000502 proteasome complex IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA
 molecular_functionGO:0070728 leucine binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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