ENSDARG00000052104


Danio rerio

Features
Gene ID: ENSDARG00000052104
  
Biological name :atg4b
  
Synonyms : atg4b / autophagy related 4B, cysteine peptidase / Q6DG88
  
Possible biological names infered from orthology : Q9Y4P1
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 27090800
Gene end: 27105013
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000106508
Ensembl peptide - ENSDARP00000128284
NCBI entrez gene - 448859     See in Manteia.
RefSeq - XM_005165923
RefSeq - NM_001089352
RefSeq Peptide - NP_001082821
swissprot - X1WDI5
swissprot - Q6DG88
ZFIN ID - ZDB-GENE-040917-3
Ensembl - ENSDARG00000052104
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATG4BENSGALG00000006298Gallus gallus
 ATG4BENSG00000168397Homo sapiens
 Atg4bENSMUSG00000026280Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
atg4a / autophagy related 4A, cysteine peptidase / Q8WYN0*ENSDARG0000001453155
atg4c / autophagy related 4C, cysteine peptidase / Q811C2* / Q96DT6* / Cysteine protease ATG4C *ENSDARG0000004437330
atg4da / autophagy related 4D, cysteine peptidase a / ATG4D* / Q8BGV9* / Q86TL0* / autophagy related 4D cysteine peptidase* / Cysteine protease ATG4D Cysteine protease ATG4D, mitochondrial*ENSDARG0000004354829
atg4db / autophagy related 4D, cysteine peptidase b / ATG4D* / Q8BGV9* / Q86TL0* / autophagy related 4D cysteine peptidase* / Cysteine protease ATG4D Cysteine protease ATG4D, mitochondrial*ENSDARG0000008814525


Protein motifs (from Interpro)
Interpro ID Name
 IPR005078  Peptidase C54
 IPR032916  Cysteine protease ATG4B, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006501 C-terminal protein lipidation IBA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006612 protein targeting to membrane IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0044804 autophagy of nucleus IBA
 biological_processGO:0051697 protein delipidation IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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