ENSDARG00000052708


Danio rerio

Features
Gene ID: ENSDARG00000052708
  
Biological name :tnni1b
  
Synonyms : tnni1b / troponin I type 1b (skeletal, slow)
  
Possible biological names infered from orthology : P19237 / Q9WUZ5 / TNNI1 / troponin I1, slow skeletal type / Troponin I, slow skeletal muscle
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 54805136
Gene end: 54826061
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000124278
Ensembl peptide - ENSDARP00000153000
Ensembl peptide - ENSDARP00000006632
Ensembl peptide - ENSDARP00000124141
NCBI entrez gene - 494070     See in Manteia.
RefSeq - NM_001008613
RefSeq Peptide - NP_001008613
swissprot - E7F5J9
swissprot - F8W417
swissprot - Q5PR62
ZFIN ID - ZDB-GENE-041212-37
Ensembl - ENSDARG00000052708
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNNI1ENSGALG00000000313Gallus gallus
 TNNI1ENSG00000159173Homo sapiens
 Tnni1ENSMUSG00000026418Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnni1a / troponin I type 1a (skeletal, slow) / TNNI1* / Q9WUZ5* / P19237* / troponin I1, slow skeletal type* / Troponin I, slow skeletal muscle *ENSDARG0000000047485
tnni1c / troponin I, skeletal, slow cENSDARG0000004255968
tnni1d / troponin I, skeletal, slow dENSDARG0000007376664
tnni4b.2 / troponin I4b, tandem duplicate 2ENSDARG0000003667161
tnni2a.1 / troponin I type 2a (skeletal, fast), tandem duplicate 1 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000004559258
tnni2a.4 / troponin I type 2a (skeletal, fast), tandem duplicate 4 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000002906953
tnni2b.2 / troponin I type 2b (skeletal, fast), tandem duplicate 2 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000002999553
tnni2b.1 / troponin I type 2b (skeletal, fast), tandem duplicate 1 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000003595853
tnni4a / troponin I4aENSDARG0000009987053
tnni2a.2 / troponin I type 2a (skeletal, fast), tandem duplicate 2 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000000584151
tnni2a.3 / troponin I type 2a (skeletal, fast), tandem duplicate 3 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000001375251
tnni4b.1 / troponin I4b, tandem duplicate 1ENSDARG0000009299950


Protein motifs (from Interpro)
Interpro ID Name
 IPR001978  Troponin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003009 skeletal muscle contraction IBA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0060048 cardiac muscle contraction IBA
 cellular_componentGO:0005861 troponin complex IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle morphology , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000114 heart heart shape , abnormal
Show

 ZFA:0000471 atrium atrium morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000037539 tnnc1b / troponin C type 1b (slow) / TNNC1* / P63316* / P19123* / troponin C1, slow skeletal and cardiac type* / Troponin C, slow skeletal and cardiac muscles *  / complex
 ENSDARG00000037954 tnnt1 / troponin T type 1 (skeletal, slow) / P13805* / O88346* / troponin T1, skeletal, slow* / troponin T1, slow skeletal type*  / complex
 ENSDARG00000070835 tnnc2 / troponin C type 2 (fast) / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*  / complex
 ENSDARG00000095002 si:rp71-17i16.4 / TNNC2* / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr