ENSDARG00000053484


Danio rerio

Features
Gene ID: ENSDARG00000053484
  
Biological name :syne2b
  
Synonyms : spectrin repeat containing, nuclear envelope 2b / syne2b
  
Possible biological names infered from orthology : Q6ZWQ0 / Q8WXH0 / spectrin repeat containing, nuclear envelope 2 / spectrin repeat containing nuclear envelope protein 2 / SYNE2
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 37075322
Gene end: 37254777
  
Corresponding Affymetrix probe sets: Dr.19408.1.A1_at (Zebrafish Array)   Dr.23735.1.A1_at (Zebrafish Array)   Dr.4661.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120709
Ensembl peptide - ENSDARP00000123075
Ensembl peptide - ENSDARP00000131353
Ensembl peptide - ENSDARP00000113565
Ensembl peptide - ENSDARP00000114120
Ensembl peptide - ENSDARP00000114223
Ensembl peptide - ENSDARP00000117446
swissprot - A0A0R4IBE3
swissprot - B8JJL0
swissprot - B8JJL1
swissprot - F1QGB0
swissprot - F1QXL4
swissprot - F1QZ70
swissprot - F1RAC6
ZFIN ID - ZDB-GENE-071218-5
Ensembl - ENSDARG00000053484
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYNE2ENSGALG00000011811Gallus gallus
 SYNE2ENSG00000054654Homo sapiens
 Syne2ENSMUSG00000063450Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-207i1.2 / SYNE2* / Q8WXH0* / Q6ZWQ0* / spectrin repeat containing, nuclear envelope 2* / spectrin repeat containing nuclear envelope protein 2*ENSDARG0000003010759
syne1b / spectrin repeat containing, nuclear envelope 1b / SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuc...ENSDARG0000006306847
syne1a / spectrin repeat containing, nuclear envelope 1a / SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuc...ENSDARG0000000949945
si:ch211-137a8.2ENSDARG0000006892614
flnca / filamin C, gamma a (actin binding protein 280) / FLNC* / Q14315* / Q8VHX6* / filamin C*ENSDARG0000001856610
flncb / filamin C, gamma b (actin binding protein 280) / FLNC* / Q14315* / filamin C*ENSDARG0000001882010
flna / filamin A, alpha (actin binding protein 280) / P21333* / Q8BTM8* / filamin A*ENSDARG0000007420110
flnb / filamin B, beta (actin binding protein 278)ENSDARG000000922817
zgc:100997 / CLMN* / calmin* / Q8C5W0* / Q96JQ2*ENSDARG000000436673
clmn / calmin / Q8C5W0* / Q96JQ2*ENSDARG000000968673
CABZ01030862.1ENSDARG000000983742
FP325130.1 / FLNB* / O75369* / filamin B*ENSDARG000001125272
zgc:165653ENSDARG000001047131


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002017  Spectrin repeat
 IPR012315  KASH domain
 IPR018159  Spectrin/alpha-actinin
 IPR030266  Nesprin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0090286 cytoskeletal anchoring at nuclear membrane IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034993 meiotic nuclear membrane microtubule tethering complex IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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