ENSDARG00000063068


Danio rerio

Features
Gene ID: ENSDARG00000063068
  
Biological name :syne1b
  
Synonyms : spectrin repeat containing, nuclear envelope 1b / syne1b
  
Possible biological names infered from orthology : Mus musculus spectrin repeat containing, nuclear envelope 1 (Syne1), transcript variant 5, mRNA. / Q6ZWR6 / Q8NF91 / spectrin repeat containing nuclear envelope protein 1 / SYNE1
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 7844927
Gene end: 8173380
  
Corresponding Affymetrix probe sets: Dr.7859.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000124669
Ensembl peptide - ENSDARP00000086261
Ensembl peptide - ENSDARP00000124184
swissprot - E7EZ30
swissprot - F8W2N1
swissprot - F8W4H6
ZFIN ID - ZDB-GENE-071218-4
Ensembl - ENSDARG00000063068
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000042638Gallus gallus
 ENSGALG00000013505Gallus gallus
 SYNE1ENSG00000131018Homo sapiens
 Syne1ENSMUSG00000096054Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
syne1a / spectrin repeat containing, nuclear envelope 1a / SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuc...ENSDARG0000000949954
si:ch211-207i1.2 / SYNE2* / Q8WXH0* / Q6ZWQ0* / spectrin repeat containing, nuclear envelope 2* / spectrin repeat containing nuclear envelope protein 2*ENSDARG0000003010719
syne2b / spectrin repeat containing, nuclear envelope 2b / SYNE2* / Q8WXH0* / Q6ZWQ0* / spectrin repeat containing, nuclear envelope 2* / spectrin repeat containing nuclear envelope protein 2*ENSDARG000000534846
flnca / filamin C, gamma a (actin binding protein 280) / FLNC* / Q14315* / Q8VHX6* / filamin C*ENSDARG000000185665
flncb / filamin C, gamma b (actin binding protein 280) / FLNC* / Q14315* / filamin C*ENSDARG000000188205
flna / filamin A, alpha (actin binding protein 280) / P21333* / Q8BTM8* / filamin A*ENSDARG000000742015
flnb / filamin B, beta (actin binding protein 278)ENSDARG000000922813
CABZ01030862.1ENSDARG000000983743
zgc:100997 / CLMN* / calmin* / Q8C5W0* / Q96JQ2*ENSDARG000000436672
si:ch211-137a8.2ENSDARG000000689262
clmn / calmin / Q8C5W0* / Q96JQ2*ENSDARG000000968672
zgc:165653ENSDARG000001047131
FP325130.1 / FLNB* / O75369* / filamin B*ENSDARG000001125270


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002017  Spectrin repeat
 IPR012315  KASH domain
 IPR018159  Spectrin/alpha-actinin
 IPR030265  Nesprin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007507 heart development IMP
 biological_processGO:0090286 cytoskeletal anchoring at nuclear membrane IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034993 meiotic nuclear membrane microtubule tethering complex IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000114 heart heart morphology , abnormal
Show

 ZFA:0001117 post-vent region post-vent region increased curvature , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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