ENSGALG00000042638


Gallus gallus

Features
Gene ID: ENSGALG00000042638
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Mus musculus spectrin repeat containing, nuclear envelope 1 (Syne1), transcript variant 5, mRNA. / Q6ZWR6 / Q8NF91 / spectrin repeat containing nuclear envelope protein 1 / SYNE1
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 49490884
Gene end: 49590938
  
Corresponding Affymetrix probe sets: GgaAffx.8667.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000061413
Ensembl peptide - ENSGALP00000050084
Ensembl peptide - ENSGALP00000051066
Ensembl peptide - ENSGALP00000052920
swissprot - A0A1D5PBF7
swissprot - A0A1D5PE65
swissprot - A0A1D5PJC8
swissprot - A0A1L1RRI4
Ensembl - ENSGALG00000042638
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syne1aENSDARG00000009499Danio rerio
 syne1bENSDARG00000063068Danio rerio
 SYNE1ENSG00000131018Homo sapiens
 Syne1ENSMUSG00000096054Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SYNE2 / spectrin repeat containing nuclear envelope protein 2 / Q6ZWQ0* / Q8WXH0* / spectrin repeat containing, nuclear envelope 2*ENSGALG0000001181119
FLNB / filamin-B / O75369* / Q80X90*ENSGALG000000056789
CLMN / calmin / Q8C5W0* / Q96JQ2*ENSGALG000000307197
SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuclear envelope 1 (Syne1), transcript variant 5, mRNA.*ENSGALG000000135050


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002017  Spectrin repeat
 IPR018159  Spectrin/alpha-actinin
 IPR030265  Nesprin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0090286 cytoskeletal anchoring at nuclear membrane IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0034993 meiotic nuclear membrane microtubule tethering complex IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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