ENSDARG00000056029


Danio rerio

Features
Gene ID: ENSDARG00000056029
  
Biological name :cyp26c1
  
Synonyms : cyp26c1 / cytochrome P450, family 26, subfamily C, polypeptide 1
  
Possible biological names infered from orthology : cytochrome P450 family 26 subfamily C member 1 / Q6V0L0
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 19522856
Gene end: 19535328
  
Corresponding Affymetrix probe sets: DrAffx.2.59.S1_at (Zebrafish Array)   NM_001029951_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000155844
Ensembl peptide - ENSDARP00000072275
NCBI entrez gene - 554036     See in Manteia.
RefSeq - NM_001029951
RefSeq Peptide - NP_001025122
swissprot - A1L1M2
ZFIN ID - ZDB-GENE-050714-2
Ensembl - ENSDARG00000056029
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CYP26C1ENSGALG00000043213Gallus gallus
 Q6V0L0ENSG00000187553Homo sapiens
 Cyp26c1ENSMUSG00000062432Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cyp26b1 / cytochrome P450, family 26, subfamily b, polypeptide 1 / Q811W2* / Q9NR63* / Cytochrome P450 26B1 * / cytochrome P450 family 26 subfamily B member 1*ENSDARG0000007712150
cyp26a1 / cytochrome P450, family 26, subfamily A, polypeptide 1 / O43174* / cytochrome P450 family 26 subfamily A member 1*ENSDARG0000003399938
cyp51 / Q1JPY5 / cytochrome P450, family 51 / Q8K0C4* / Q16850* / CYP51A1* / Lanosterol 14-alpha demethylase * / cytochrome P450 family 51 subfamily A member 1*ENSDARG0000004264118


Protein motifs (from Interpro)
Interpro ID Name
 IPR001128  Cytochrome P450
 IPR002403  Cytochrome P450, E-class, group IV
 IPR017972  Cytochrome P450, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001944 vasculature development IGI
 biological_processGO:0003151 outflow tract morphogenesis IGI
 biological_processGO:0016125 sterol metabolic process IBA
 biological_processGO:0021661 rhombomere 4 morphogenesis IGI
 biological_processGO:0030902 hindbrain development IGI
 biological_processGO:0033339 pectoral fin development IMP
 biological_processGO:0042573 retinoic acid metabolic process IDA
 biological_processGO:0055014 atrial cardiac muscle cell development IGI
 biological_processGO:0055114 oxidation-reduction process IEA
 molecular_functionGO:0004497 monooxygenase activity IBA
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
 molecular_functionGO:0020037 heme binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Vitamins
RA biosynthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000051 otic vesicle otic vesicle morphology , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased amount , abnormal
whole organism retinoic acid increased amount , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin decreased size , abnormal
pectoral fin decreased amount , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000035904 crabp1b / cellular retinoic acid binding protein 1b / CRABP1* / P29762* / P62965* / cellular retinoic acid binding protein 1*  / reaction
 ENSDARG00000045926 crabp1a / cellular retinoic acid binding protein 1a / CRABP1* / P29762* / P62965* / cellular retinoic acid binding protein 1*  / reaction






 

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