ENSDARG00000045926


Danio rerio

Features
Gene ID: ENSDARG00000045926
  
Biological name :crabp1a
  
Synonyms : cellular retinoic acid binding protein 1a / crabp1a
  
Possible biological names infered from orthology : cellular retinoic acid binding protein 1 / CRABP1 / P29762 / P62965
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 6306885
Gene end: 6337380
  
Corresponding Affymetrix probe sets: Dr.12552.1.S1_at (Zebrafish Array)   NM_182858_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000117524
Ensembl peptide - ENSDARP00000067509
NCBI entrez gene - 171479     See in Manteia.
RefSeq - NM_182858
RefSeq Peptide - NP_878278
swissprot - E9QD41
swissprot - Q7T0F4
ZFIN ID - ZDB-GENE-020320-3
Ensembl - ENSDARG00000045926
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P40220ENSGALG00000003193Gallus gallus
 CRABP1ENSG00000166426Homo sapiens
 Crabp1ENSMUSG00000032291Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
crabp1b / cellular retinoic acid binding protein 1b / CRABP1* / P29762* / P62965* / cellular retinoic acid binding protein 1*ENSDARG0000003590487
crabp2a / cellular retinoic acid binding protein 2, a / CRABP2* / P22935* / P29373* / cellular retinoic acid binding protein 2*ENSDARG0000007397866
crabp2b / cellular retinoic acid binding protein 2, b / CRABP2* / P22935* / P29373* / cellular retinoic acid binding protein 2*ENSDARG0000003044959
fabp3 / fatty acid binding protein 3, muscle and heart / P05413* / P11404* / fatty acid binding protein 3* / Fatty acid-binding protein, heart *ENSDARG0000002329041
si:ch211-119o8.7 / RBP1 (1 of many) / RBP1* / P09455* / Q00915* / retinol binding protein 1* / retinol binding protein 1, cellular*ENSDARG0000003874240
rbp1 / retinol binding protein 1b, cellular / Q00915* / P09455* / retinol binding protein 1* / retinol binding protein 1, cellular*ENSDARG0000001807739
fabp11a / fatty acid binding protein 11a / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...ENSDARG0000001729938
fabp11b / fatty acid binding protein 11b / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...ENSDARG0000000231137
rbp2a / retinol binding protein 2a, cellular / RBP2* / Q08652* / P50120* / retinol binding protein 2* / retinol binding protein 2, cellular*ENSDARG0000007003837
fabp7b / fatty acid binding protein 7, brain, b / FABP7* / O15540* / P51880* / fatty acid binding protein 7* / Fatty acid-binding protein, brain *ENSDARG0000003465036
rbp7b / retinol binding protein 7b, cellular / RBP7* / Q9EPC5* / Q96R05* / retinol binding protein 7* / retinol binding protein 7, cellular*ENSDARG0000007048636
rbp7a / retinol binding protein 7a, cellular / RBP7* / Q9EPC5* / Q96R05* / retinol binding protein 7* / retinol binding protein 7, cellular*ENSDARG0000009190636
rbp5 / retinol binding protein 1a, cellular / P82980* / retinol binding protein 5*ENSDARG0000010148136
rbp2b / retinol binding protein 2b, cellularENSDARG0000009377435
fabp7a / fatty acid binding protein 7, brain, a / FABP7* / O15540* / P51880* / fatty acid binding protein 7* / Fatty acid-binding protein, brain *ENSDARG0000000769734
CABZ01088982.1 / PMP2* / FABP9* / FABP4* / FABP5* / A6NFH5* / FABP12* / P02689* / P15090* / Q01469* / Q0Z7S8* / peripheral myelin protein 2* / fatty acid binding protein 4* / fatty acid bin...ENSDARG0000010925929


Protein motifs (from Interpro)
Interpro ID Name
 IPR000463  Cytosolic fatty-acid binding
 IPR000566  Lipocalin/cytosolic fatty-acid binding domain
 IPR012674  Calycin
 IPR031259  Intracellular lipid binding protein
 IPR031279  Cellular retinoic acid-binding protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034653 retinoic acid catabolic process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0001972 retinoic acid binding IEA
 molecular_functionGO:0008289 lipid binding IEA


Pathways (from Reactome)
Pathway description
RA biosynthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000033999 cyp26a1 / cytochrome P450, family 26, subfamily A, polypeptide 1 / O43174* / cytochrome P450 family 26 subfamily A member 1*  / reaction
 ENSDARG00000056029 cyp26c1 / cytochrome P450, family 26, subfamily C, polypeptide 1 / Q6V0L0* / cytochrome P450 family 26 subfamily C member 1*  / reaction
 ENSDARG00000077121 cyp26b1 / cytochrome P450, family 26, subfamily b, polypeptide 1 / Q811W2* / Q9NR63* / Cytochrome P450 26B1 * / cytochrome P450 family 26 subfamily B member 1*  / reaction






 

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