ENSDARG00000057101


Danio rerio

Features
Gene ID: ENSDARG00000057101
  
Biological name :rnf180
  
Synonyms : ring finger protein 180 / rnf180
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF180 / Q3U827 / Q86T96
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 20940022
Gene end: 20945658
  
Corresponding Affymetrix probe sets: Dr.11460.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000074153
NCBI entrez gene - 793295     See in Manteia.
RefSeq - NM_001110404
RefSeq Peptide - NP_001103874
swissprot - A8WGN5
ZFIN ID - ZDB-GENE-040426-1620
Ensembl - ENSDARG00000057101
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF180ENSGALG00000014743Gallus gallus
 Q86T96ENSG00000164197Homo sapiens
 Q3U827ENSMUSG00000021720Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RNF180 / si:dkey-250l23.4 / Q86T96* / Q3U827* / ring finger protein 180* / E3 ubiquitin-protein ligase RNF180 *ENSDARG0000007372028


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR033263  E3 ubiquitin-protein ligase RNF180


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IEA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0031624 ubiquitin conjugating enzyme binding IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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