ENSDARG00000058873


Danio rerio

Features
Gene ID: ENSDARG00000058873
  
Biological name :ptpdc1b
  
Synonyms : protein tyrosine phosphatase domain containing 1b / ptpdc1b
  
Possible biological names infered from orthology : A2A3K4 / protein tyrosine phosphatase domain containing 1 / Protein tyrosine phosphatase domain-containing protein 1 / PTPDC1 / Q6NZK8
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 4373336
Gene end: 4390318
  
Corresponding Affymetrix probe sets: Dr.12870.1.A1_at (Zebrafish Array)   XM_694462_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000122255
NCBI entrez gene - 570928     See in Manteia.
RefSeq - XM_009296601
RefSeq - XM_694462
swissprot - E7FBM8
ZFIN ID - ZDB-GENE-090312-138
Ensembl - ENSDARG00000058873
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTPDC1ENSGALG00000005128Gallus gallus
 A2A3K4ENSG00000158079Homo sapiens
 Ptpdc1ENSMUSG00000038042Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptpdc1a / protein tyrosine phosphatase domain containing 1a / A2A3K4* / PTPDC1* / Q6NZK8* / protein tyrosine phosphatase domain containing 1* / Protein tyrosine phosphatase domain-containin...ENSDARG0000006165650
zgc:77752ENSDARG0000004238731


Protein motifs (from Interpro)
Interpro ID Name
 IPR000340  Dual specificity phosphatase, catalytic domain
 IPR000387  Tyrosine specific protein phosphatases domain
 IPR003595  Protein-tyrosine phosphatase, catalytic
 IPR016130  Protein-tyrosine phosphatase, active site
 IPR029021  Protein-tyrosine phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IEA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IEA
 molecular_functionGO:0008138 protein tyrosine/serine/threonine phosphatase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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