ENSDARG00000060256


Danio rerio

Features
Gene ID: ENSDARG00000060256
  
Biological name :alkbh8
  
Synonyms : alkbh8 / alkB homolog 8, tRNA methyltransferase
  
Possible biological names infered from orthology : Alkylated DNA repair 8 / Q80Y20 / Q96BT7
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 42156064
Gene end: 42175617
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000079150
NCBI entrez gene - 556362     See in Manteia.
RefSeq - XM_021466993
swissprot - E9QB52
ZFIN ID - ZDB-GENE-100922-251
Ensembl - ENSDARG00000060256
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ALKBH8ENSGALG00000017170Gallus gallus
 ALKBH8ENSG00000137760Homo sapiens
 Alkbh8ENSMUSG00000025899Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trmt9b / tRNA methyltransferase 9B / Q80WQ4* / Q9P272* / 6430573F11Rik* / tRNA methyltransferase 9B (putative)* / Probable tRNA methyltransferase 9-like protein *ENSDARG0000010263614


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR005123  Oxoglutarate/iron-dependent dioxygenase
 IPR013216  Methyltransferase type 11
 IPR027450  Alpha-ketoglutarate-dependent dioxygenase AlkB-like
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase
 IPR032863  Alkylated DNA repair protein alkB homologue 8
 IPR034256  ALKBH8, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002098 tRNA wobble uridine modification IBA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0030488 tRNA methylation IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000049 tRNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008198 ferrous iron binding IBA
 molecular_functionGO:0016300 tRNA (uracil) methyltransferase activity IBA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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