ENSDARG00000060438


Danio rerio

Features
Gene ID: ENSDARG00000060438
  
Biological name :tbl1x
  
Synonyms : tbl1x / transducin beta like 1 X-linked
  
Possible biological names infered from orthology : F-box-like/WD repeat-containing protein TBL1X / O60907 / Q9BQ87 / Q9QXE7 / TBL1Y / transducin beta like 1 Y-linked
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 55093078
Gene end: 55128839
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000079570
NCBI entrez gene - 560294     See in Manteia.
RefSeq - NM_001082994
RefSeq Peptide - NP_001076463
swissprot - A2RUX0
ZFIN ID - ZDB-GENE-070209-131
Ensembl - ENSDARG00000060438
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TBL1XENSGALG00000040006Gallus gallus
 TBL1XENSG00000101849Homo sapiens
 TBL1YENSG00000092377Homo sapiens
 Tbl1xENSMUSG00000025246Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbl1xr1b / transducin (beta)-like 1 X-linked receptor 1b / Q9BZK7* / Q8BHJ5* / TBL1XR1* / transducin beta like 1 X-linked receptor 1* / F-box-like/WD repeat-containing protein TBL1XR1 *ENSDARG0000000896684
tbl1xr1a / transducin (beta)-like 1 X-linked receptor 1a / Q9BZK7* / Q8BHJ5* / TBL1XR1* / transducin beta like 1 X-linked receptor 1* / F-box-like/WD repeat-containing protein TBL1XR1 *ENSDARG0000005869668
thoc3 / THO complex 3 / Q8VE80* / Q96J01* / THO complex subunit 3 *ENSDARG0000005651714


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006594  LIS1 homology motif
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0016575 histone deacetylation IBA
 biological_processGO:1903507 negative regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0000118 histone deacetylase complex IBA
 molecular_functionGO:0003714 transcription corepressor activity IBA


Pathways (from Reactome)
Pathway description
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000019357 Q1AMT3 / fabp1a / fatty acid binding protein 1a, liver / FABP1* / P07148* / fatty acid binding protein 1*  / reaction
 ENSDARG00000058696 tbl1xr1a / transducin (beta)-like 1 X-linked receptor 1a / Q9BZK7* / Q8BHJ5* / TBL1XR1* / transducin beta like 1 X-linked receptor 1* / F-box-like/WD repeat-containing protein TBL1XR1 *  / complex / reaction
 ENSDARG00000057737 rxraa / retinoid X receptor, alpha a / RXRA* / P19793* / P28700* / retinoid X receptor alpha*  / complex / reaction
 ENSDARG00000031777 pparaa / peroxisome proliferator-activated receptor alpha a / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*  / complex / reaction
 ENSDARG00000008966 tbl1xr1b / transducin (beta)-like 1 X-linked receptor 1b / Q9BZK7* / Q8BHJ5* / TBL1XR1* / transducin beta like 1 X-linked receptor 1* / F-box-like/WD repeat-containing protein TBL1XR1 *  / complex / reaction
 ENSDARG00000054323 pparab / peroxisome proliferator-activated receptor alpha b / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*  / complex / reaction
 ENSDARG00000059227 Q4VBT1 / fabp1b.1 / fatty acid binding protein 1b, tandem duplicate 1 / FABP1* / P07148* / P12710* / fatty acid binding protein 1* / Fatty acid-binding protein, liver *  / reaction
 ENSDARG00000103398 fabp1b.2 / fatty acid binding protein 1b, liver, tandem duplicate 2 / FABP1* / P07148* / P12710* / fatty acid binding protein 1* / Fatty acid-binding protein, liver *  / reaction






 

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