ENSDARG00000060481


Danio rerio

Features
Gene ID: ENSDARG00000060481
  
Biological name :atl1
  
Synonyms : atl1 / atlastin GTPase 1
  
Possible biological names infered from orthology : Atlastin-1 / Q8BH66 / Q8WXF7
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 36764715
Gene end: 36784400
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000079665
Ensembl peptide - ENSDARP00000116645
Ensembl peptide - ENSDARP00000101056
NCBI entrez gene - 571909     See in Manteia.
RefSeq - NM_001145700
RefSeq - XM_005157009
RefSeq Peptide - NP_001139172
swissprot - F1R155
swissprot - E9QGX9
swissprot - B8A6H1
ZFIN ID - ZDB-GENE-030131-8003
Ensembl - ENSDARG00000060481
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATL1ENSGALG00000012339Gallus gallus
 ATL1ENSG00000198513Homo sapiens
 Atl1ENSMUSG00000021066Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
atl2 / atlastin GTPase 2 / Q6PA06* / Q8NHH9* / Mus musculus atlastin GTPase 2 (Atl2), transcript variant 5, mRNA.*ENSDARG0000005771964
atl3 / atlastin 3 / Q6DD88* / Q91YH5* / atlastin GTPase 3*ENSDARG0000000427058


Protein motifs (from Interpro)
Interpro ID Name
 IPR003191  Guanylate-binding protein/Atlastin, C-terminal
 IPR015894  Guanylate-binding protein, N-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030386  GB1/RHD3-type guanine nucleotide-binding (G) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030514 negative regulation of BMP signaling pathway IDA
 biological_processGO:0048263 determination of dorsal identity IGI
 cellular_componentGO:0005770 late endosome IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000100 cerebellum cerebellum disorganized , abnormal
Show

 ZFA:0009063 peripheral neuron peripheral neuron decreased length , abnormal
peripheral neuron decreased thickness , abnormal
Show

 ZFA:0009244 primary motor neuron primary motor neuron axon branched , abnormal
Show

 ZFA:0009247 secondary motor neuron secondary motor neuron axon mislocalised , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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