ENSDARG00000061203


Danio rerio

Features
Gene ID: ENSDARG00000061203
  
Biological name :trpc1
  
Synonyms : transient receptor potential cation channel, subfamily C, member 1 / trpc1
  
Possible biological names infered from orthology : P48995
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 5840258
Gene end: 5869622
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000116329
Ensembl peptide - ENSDARP00000081468
NCBI entrez gene - 570841     See in Manteia.
RefSeq - NM_001198661
RefSeq Peptide - NP_001185590
swissprot - F1R2G3
swissprot - F1R1C4
ZFIN ID - ZDB-GENE-070830-1
Ensembl - ENSDARG00000061203
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRPC1ENSGALG00000002639Gallus gallus
 TRPC1ENSG00000144935Homo sapiens
 Trpc1ENSMUSG00000032839Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trpc4b / transient receptor potential cation channel, subfamily C, member 4b / TRPC4* / Q9QUQ5* / Q9UBN4* / transient receptor potential cation channel subfamily C member 4*ENSDARG0000010201743
trpc4a / transient receptor potential cation channel, subfamily C, member 4a / TRPC4* / Q9QUQ5* / Q9UBN4* / transient receptor potential cation channel subfamily C member 4*ENSDARG0000007050742
trpc5b / transient receptor potential cation channel, subfamily C, member 5b / TRPC5* / Q9QX29* / Q9UL62* / transient receptor potential cation channel subfamily C member 5*ENSDARG0000006083740
trpc6a / transient receptor potential cation channel, subfamily C, member 6a / TRPC6* / Q61143* / Q9Y210* / transient receptor potential cation channel subfamily C member 6*ENSDARG0000005662534
trpc5a / transient receptor potential cation channel, subfamily C, member 5a / TRPC5* / Q9QX29* / Q9UL62* / transient receptor potential cation channel subfamily C member 5*ENSDARG0000007050433
trpc7a / transient receptor potential cation channel, subfamily C, member 7a / TRPC7* / Q9HCX4* / Q9WVC5* / transient receptor potential cation channel subfamily C member 7*ENSDARG0000002752332
trpc6b / transient receptor potential cation channel, subfamily C, member 6b / TRPC6* / Q61143* / Q9Y210* / transient receptor potential cation channel subfamily C member 6*ENSDARG0000006773032
trpc3 / transient receptor potential cation channel, subfamily C, member 3 / Q13507*ENSDARG0000009829130
trpc2a / transient receptor potential cation channel, subfamily C, member 2a / Trpc2* / Q9R244* / Xntrpc* / Short transient receptor potential channel 2 * / Xndc1-transient receptor potenti...ENSDARG0000003906529
trpc7b / transient receptor potential cation channel, subfamily C, member 7b / TRPC7* / Q9HCX4* / transient receptor potential cation channel subfamily C member 7*ENSDARG0000007946929
trpc2b / transient receptor potential cation channel, subfamily C, member 2b / Trpc2* / Q9R244* / Xntrpc* / Short transient receptor potential channel 2 * / Xndc1-transient receptor potenti...ENSDARG0000000334428


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR002153  Transient receptor potential channel, canonical
 IPR004729  Transient receptor potential channel
 IPR005457  Transient receptor potential channel, canonical 1
 IPR005821  Ion transport domain
 IPR013555  Transient receptor ion channel domain
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IMP
 biological_processGO:0001570 vasculogenesis IMP
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006828 manganese ion transport IBA
 biological_processGO:0046847 filopodium assembly IMP
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA
 molecular_functionGO:0015279 store-operated calcium channel activity IBA


Pathways (from Reactome)
Pathway description
TRP channels
Ion homeostasis
Antigen activates B Cell Receptor (BCR) leading to generation of second messengers


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0001057 intersegmental vein intersegmental vein decreased size , abnormal
intersegmental vein filopodium decreased length , abnormal
Show

 ZFA:0001117 post-vent region post-vent region increased curvature , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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