ENSDARG00000003344


Danio rerio

Features
Gene ID: ENSDARG00000003344
  
Biological name :trpc2b
  
Synonyms : transient receptor potential cation channel, subfamily C, member 2b / trpc2b
  
Possible biological names infered from orthology : Q9R244 / Short transient receptor potential channel 2 / Trpc2 / Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough / Xntrpc
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 30746348
Gene end: 30765533
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000050171
NCBI entrez gene - 562120     See in Manteia.
RefSeq - NM_001030166
RefSeq Peptide - NP_001025337
swissprot - F1QDU6
ZFIN ID - ZDB-GENE-050712-3
Ensembl - ENSDARG00000003344
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Trpc2ENSMUSG00000100254Mus musculus
 XntrpcENSMUSG00000070425Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trpc2a / transient receptor potential cation channel, subfamily C, member 2a / Trpc2* / Q9R244* / Xntrpc* / Short transient receptor potential channel 2 * / Xndc1-transient receptor potenti...ENSDARG0000003906556
trpc6a / transient receptor potential cation channel, subfamily C, member 6a / TRPC6* / Q61143* / Q9Y210* / transient receptor potential cation channel subfamily C member 6*ENSDARG0000005662525
trpc6b / transient receptor potential cation channel, subfamily C, member 6b / TRPC6* / Q61143* / Q9Y210* / transient receptor potential cation channel subfamily C member 6*ENSDARG0000006773025
trpc7a / transient receptor potential cation channel, subfamily C, member 7a / TRPC7* / Q9HCX4* / Q9WVC5* / transient receptor potential cation channel subfamily C member 7*ENSDARG0000002752324
trpc4a / transient receptor potential cation channel, subfamily C, member 4a / TRPC4* / Q9QUQ5* / Q9UBN4* / transient receptor potential cation channel subfamily C member 4*ENSDARG0000007050723
trpc4b / transient receptor potential cation channel, subfamily C, member 4b / TRPC4* / Q9QUQ5* / Q9UBN4* / transient receptor potential cation channel subfamily C member 4*ENSDARG0000010201723
trpc5b / transient receptor potential cation channel, subfamily C, member 5b / TRPC5* / Q9QX29* / Q9UL62* / transient receptor potential cation channel subfamily C member 5*ENSDARG0000006083722
trpc3 / transient receptor potential cation channel, subfamily C, member 3 / Q13507*ENSDARG0000009829122
trpc1 / transient receptor potential cation channel, subfamily C, member 1 / P48995*ENSDARG0000006120320
trpc7b / transient receptor potential cation channel, subfamily C, member 7b / TRPC7* / Q9HCX4* / transient receptor potential cation channel subfamily C member 7*ENSDARG0000007946920
trpc5a / transient receptor potential cation channel, subfamily C, member 5a / TRPC5* / Q9QX29* / Q9UL62* / transient receptor potential cation channel subfamily C member 5*ENSDARG0000007050416


Protein motifs (from Interpro)
Interpro ID Name
 IPR002153  Transient receptor potential channel, canonical
 IPR005458  Transient receptor potential channel, canonical 2
 IPR005821  Ion transport domain
 IPR013555  Transient receptor ion channel domain
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006828 manganese ion transport IBA
 biological_processGO:0007338 single fertilization IBA
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA
 molecular_functionGO:0015279 store-operated calcium channel activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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