ENSDARG00000062479


Danio rerio

Features
Gene ID: ENSDARG00000062479
  
Biological name :vcam1b
  
Synonyms : vascular cell adhesion molecule 1b / vcam1b
  
Possible biological names infered from orthology : P19320 / P29533 / vascular cell adhesion molecule 1 / VCAM1
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 16169447
Gene end: 16180849
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000084823
Ensembl peptide - ENSDARP00000137248
Ensembl peptide - ENSDARP00000144690
NCBI entrez gene - 561971     See in Manteia.
swissprot - A5PMX0
ZFIN ID - ZDB-GENE-070209-238
Ensembl - ENSDARG00000062479
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VCAM1ENSGALG00000005257Gallus gallus
 VCAM1ENSG00000162692Homo sapiens
 Vcam1ENSMUSG00000027962Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-24p1.1 / CD22* / P20273* / CD22 molecule*ENSDARG0000003909617
vcam1a / vascular cell adhesion molecule 1aENSDARG0000007820112
si:dkey-33i11.1 / CD22* / P20273* / CD22 molecule*ENSDARG0000005302711
si:ch211-152f2.2 / CD22* / P20273* / CD22 molecule*ENSDARG0000003491010
si:ch211-152f2.3 / CD22* / P20273* / CD22 molecule*ENSDARG000000434459
si:ch211-1f22.14 / CD22* / P20273* / CD22 molecule*ENSDARG000000623099
si:ch211-152f2.1 / CD22* / P20273* / CD22 molecule*ENSDARG000000923229
si:ch211-1f22.8 / CD22* / P20273* / CD22 molecule*ENSDARG000000965079
si:dkey-27j5.8 / si:dkey-27j5.10 / CD22* / P20273* / CD22 molecule*ENSDARG000000965349
si:ch211-1f22.10 / CD22* / P20273* / CD22 molecule*ENSDARG000000966199
si:ch211-1f22.16 / CD22* / P20273* / CD22 molecule*ENSDARG000000966709
cd22 / cd22 molecule / P20273*ENSDARG000000530058
zgc:171470 / CD22* / P20273* / CD22 molecule*ENSDARG000000578448
zmp:0000001289 / CD22* / P20273* / CD22 molecule*ENSDARG000000898948
si:dkey-27j5.10 / CD22* / P20273* / CD22 molecule*ENSDARG000000941578
si:ch211-1f22.11 / CD22* / P20273* / CD22 molecule*ENSDARG000000945248
si:ch73-94k4.5 / CD22* / P20273* / CD22 molecule*ENSDARG000000965238
si:ch211-1f22.13 / CD22* / P20273* / CD22 molecule*ENSDARG000000966238
si:ch211-1f22.3 / CD22* / P20273* / CD22 molecule*ENSDARG000001015328
si:ch211-1f22.12 / CD22* / P20273* / CD22 molecule*ENSDARG000000938457


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003989  Vascular cell adhesion molecule-1
 IPR007110  Immunoglobulin-like domain
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001946 lymphangiogenesis IGI
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
Integrin cell surface interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye edematous , abnormal
Show

 ZFA:0001115 trunk trunk edematous , abnormal
Show

 ZFA:0005110 thoracic duct thoracic duct absent , abnormal
Show

 ZFA:0005605 lymphangioblast cord lymphangioblast cord absent , abnormal
lymphangioblast cord lymphangioblast decreased amount , abnormal
Show

 ZFA:0009395 vascular lymphangioblast vascular lymphangioblast absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000032435 itga9 / integrin, alpha 9 / Q13797* / integrin subunit alpha 9*  / complex / reaction
 ENSDARG00000071863 itgb1a / integrin, beta 1a / ITGB1* / P05556* / P09055* / Integrin beta-1 * / integrin subunit beta 1*  / complex / reaction
 ENSDARG00000103056 itga4 / integrin alpha 4 / P13612* / integrin subunit alpha 4*  / complex / reaction






 

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