ENSGALG00000005257


Gallus gallus

Features
Gene ID: ENSGALG00000005257
  
Biological name :VCAM1
  
Synonyms : vascular cell adhesion molecule 1 / VCAM1
  
Possible biological names infered from orthology : P19320 / P29533
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 11858182
Gene end: 11864932
  
Corresponding Affymetrix probe sets: Gga.10270.1.S1_at (Chicken Array)   Gga.12928.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008427
NCBI entrez gene - 424467     See in Manteia.
RefSeq - XM_004936551
RefSeq - XM_422310
swissprot - F1P201
Ensembl - ENSGALG00000005257
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vcam1bENSDARG00000062479Danio rerio
 VCAM1ENSG00000162692Homo sapiens
 Vcam1ENSMUSG00000027962Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003987  Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminal
 IPR003989  Vascular cell adhesion molecule-1
 IPR007110  Immunoglobulin-like domain
 IPR008424  Immunoglobulin C2-set
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
 biological_processGO:0007159 leukocyte cell-cell adhesion IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0009308 amine metabolic process IEA
 biological_processGO:0022614 membrane to membrane docking IEA
 biological_processGO:0035584 calcium-mediated signaling using intracellular calcium source IEA
 biological_processGO:0042102 positive regulation of T cell proliferation IEA
 biological_processGO:0050901 leukocyte tethering or rolling IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0002102 podosome IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005902 microvillus IEA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030175 filopodium IEA
 cellular_componentGO:0045177 apical part of cell IEA
 cellular_componentGO:0071065 alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex IEA
 molecular_functionGO:0005178 integrin binding IEA
 molecular_functionGO:0008131 primary amine oxidase activity IEA
 molecular_functionGO:0050839 cell adhesion molecule binding IEA


Pathways (from Reactome)
Pathway description
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
Integrin cell surface interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000007145 ITGB1 / integrin subunit beta 1 / P05556* / P09055* / Integrin beta-1 *  / complex / reaction
 ENSGALG00000041577 ITGA4 / integrin subunit alpha 4 / P13612*  / complex / reaction






 

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