ENSDARG00000062794


Danio rerio

Features
Gene ID: ENSDARG00000062794
  
Biological name :trim36
  
Synonyms : trim36 / tripartite motif containing 36
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase Trim36 / Q80WG7 / Q9NQ86
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 391590
Gene end: 410770
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126165
Ensembl peptide - ENSDARP00000125739
Ensembl peptide - ENSDARP00000125921
Ensembl peptide - ENSDARP00000110289
Ensembl peptide - ENSDARP00000085610
NCBI entrez gene - 406849     See in Manteia.
RefSeq - NM_213528
RefSeq Peptide - NP_998693
swissprot - F1QVG3
swissprot - F1QUB4
swissprot - I3IS73
swissprot - I3ISN5
swissprot - I3ITA3
ZFIN ID - ZDB-GENE-040426-2936
Ensembl - ENSDARG00000062794
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM36ENSGALG00000008188Gallus gallus
 Q9NQ86ENSG00000152503Homo sapiens
 Q80WG7ENSMUSG00000033949Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim46a / tripartite motif containing 46a / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000001236744
trim46b / tripartite motif containing 46b / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000005864942
mid1 / midline 1 / O15344* / O70583* / E3 ubiquitin-protein ligase Midline-1 *ENSDARG0000006048226
mid2 / midline 2 / Q9UJV3*ENSDARG0000003487125
trim9 / tripartite motif containing 9 / Q8C7M3* / Q9C026* / E3 ubiquitin-protein ligase TRIM9 *ENSDARG0000003912324
TRIM67 / tripartite motif containing 67 / Q6ZTA4*ENSDARG0000010878724
trim55a / tripartite motif containing 55a / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000002959616
trim101 / tripartite motif containing 101ENSDARG0000001826415
trim55b / tripartite motif containing 55b / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000005815815
fsd1 / Q1LY10 / fibronectin type III and SPRY domain containing 1 / Q9BTV5*ENSDARG0000006201715
trim63a / tripartite motif containing 63a / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000002802714
fsd1l / fibronectin type III and SPRY domain containing 1-like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSDARG0000005943214
trim63b / tripartite motif containing 63b / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000008668514
trim54 / tripartite motif containing 54 / Q9BYV2* / Q9ERP3* / Tripartite motif-containing protein 54 *ENSDARG0000002990713


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR003961  Fibronectin type III
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR027726  E3 ubiquitin-protein ligase Trim36


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0051726 regulation of cell cycle IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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