ENSDARG00000063190


Danio rerio

Features
Gene ID: ENSDARG00000063190
  
Biological name :zranb1b
  
Synonyms : A0JMQ9 / zinc finger, RAN-binding domain containing 1b / zranb1b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 8951449
Gene end: 8976307
  
Corresponding Affymetrix probe sets: Dr.14548.1.A1_at (Zebrafish Array)   NM_001077768_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000086546
NCBI entrez gene - 777720     See in Manteia.
RefSeq - NM_001077768
RefSeq Peptide - NP_001071236
swissprot - A0JMQ9
ZFIN ID - ZDB-GENE-061110-94
Ensembl - ENSDARG00000063190
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zranb1a / zinc finger, RAN-binding domain containing 1a / Q9UGI0* / ZRANB1* / zinc finger RANBP2-type containing 1*ENSDARG0000006025773
otud7b / OTU deubiquitinase 7B / B2RUR8* / Q6GQQ9* / OTU domain-containing protein 7B *ENSDARG0000001722017
OTUD7A / si:dkey-37f18.2 / Q8R554* / Q8TE49* / OTU deubiquitinase 7A* / OTU domain-containing protein 7A *ENSDARG0000004555617
tnfaip3 / tumor necrosis factor, alpha-induced protein 3 / P21580* / Q60769* / TNF alpha induced protein 3*ENSDARG0000002777715


Protein motifs (from Interpro)
Interpro ID Name
 IPR001876  Zinc finger, RanBP2-type
 IPR003323  OTU domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0007010 cytoskeleton organization IBA
 biological_processGO:0007420 brain development IGI
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0016477 cell migration ISS
 biological_processGO:0021551 central nervous system morphogenesis IMP
 biological_processGO:0022604 regulation of cell morphogenesis ISS
 biological_processGO:0030177 positive regulation of Wnt signaling pathway ISS
 biological_processGO:0035523 protein K29-linked deubiquitination IBA
 biological_processGO:0070536 protein K63-linked deubiquitination ISS
 biological_processGO:0071947 protein deubiquitination involved in ubiquitin-dependent protein catabolic process IBA
 biological_processGO:1990168 protein K33-linked deubiquitination IBA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IBA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070530 K63-linked polyubiquitin modification-dependent protein binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000106 extension extension aplastic , abnormal
Show

 ZFA:0000135 notochord notochord malformed , abnormal
Show

 ZFA:0000155 somite somite fused with somite , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curled , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr