ENSDARG00000063475


Danio rerio

Features
Gene ID: ENSDARG00000063475
  
Biological name :abcg1
  
Synonyms : abcg1 / ATP-binding cassette, sub-family G (WHITE), member 1
  
Possible biological names infered from orthology : ATP binding cassette subfamily G member 1 / P45844 / Q64343
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 5028608
Gene end: 5074983
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000087241
NCBI entrez gene - 556979     See in Manteia.
RefSeq - NM_001110454
RefSeq Peptide - NP_001103924
swissprot - F1RDP4
ZFIN ID - ZDB-GENE-070424-84
Ensembl - ENSDARG00000063475
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABCG1ENSGALG00000016164Gallus gallus
 ABCG1ENSG00000160179Homo sapiens
 Abcg1ENSMUSG00000024030Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
abcg4a / ATP-binding cassette, sub-family G (WHITE), member 4a / ABCG4* / Q9H172* / ATP binding cassette subfamily G member 4*ENSDARG0000006104768
abcg4b / ATP-binding cassette, sub-family G (WHITE), member 4b / ABCG4* / Q9H172* / ATP binding cassette subfamily G member 4*ENSDARG0000007806868
abcg2a / ATP-binding cassette, sub-family G (WHITE), member 2a / Abcg3* / ABCG2* / Q9UNQ0* / Q99P81* / ATP binding cassette subfamily G member 3* / ATP binding cassette subfamily G member 2...ENSDARG0000010007525
abcg2c / ATP-binding cassette, sub-family G (WHITE), member 2cENSDARG0000005857424
abcg2b / ATP-binding cassette, sub-family G (WHITE), member 2bENSDARG0000007936124
abcg5 / ATP-binding cassette, sub-family G (WHITE), member 5 / Q99PE8* / Q9H222* / ATP binding cassette subfamily G member 5*ENSDARG0000006307823
abcg2d / ATP-binding cassette, sub-family G (WHITE), member 2d / Abcg3* / ABCG2* / Q9UNQ0* / Q99P81* / ATP binding cassette subfamily G member 3* / ATP binding cassette subfamily G member 2...ENSDARG0000001681822


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR013525  ABC-2 type transporter
 IPR017871  ABC transporter, conserved site
 IPR020064  ABC transporter, G1
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002040 sprouting angiogenesis IGI
 biological_processGO:0010874 regulation of cholesterol efflux IGI
 biological_processGO:0032367 intracellular cholesterol transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0017127 cholesterol transporter activity IEA
 molecular_functionGO:0034041 sterol-transporting ATPase activity IBA


Pathways (from Reactome)
Pathway description
ABC transporters in lipid homeostasis
HDL remodeling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001061 intersegmental artery intersegmental artery sprouting angiogenesis disrupted , abnormal
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 ZFA:0005035 subintestinal vein subintestinal vein sprouting angiogenesis disrupted , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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