ENSDARG00000068589


Danio rerio

Features
Gene ID: ENSDARG00000068589
  
Biological name :vimr1
  
Synonyms : vimentin-related 1 / vimr1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 547098
Gene end: 551014
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000090024
NCBI entrez gene - 572200     See in Manteia.
swissprot - F1RA03
ZFIN ID - ZDB-GENE-130530-722
Ensembl - ENSDARG00000068589
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522142
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450142
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324841
zgc:65851ENSDARG0000001228140
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530140
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865640
vim / vimentin / P08670* / P20152*ENSDARG0000001000839
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186239
prph / peripherin / P41219*ENSDARG0000002830638
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756837
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242636
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369736
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135135
si:dkey-33c12.3ENSDARG0000005788133
ngs / notochord granular surfaceENSDARG0000005432132
zgc:172323ENSDARG0000005320131
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341528
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429928
zgc:136930ENSDARG0000005519228
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162428


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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