ENSDARG00000069175


Danio rerio

Features
Gene ID: ENSDARG00000069175
  
Biological name :vps4b
  
Synonyms : vacuolar protein sorting 4b homolog B (S. cerevisiae) / vps4b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 13255986
Gene end: 13333991
  
Corresponding Affymetrix probe sets: Dr.19047.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000074209
Ensembl peptide - ENSDARP00000136647
Ensembl peptide - ENSDARP00000111799
NCBI entrez gene - 393880     See in Manteia.
RefSeq - NM_001291422
RefSeq - NM_001100962
RefSeq Peptide - NP_001094432
RefSeq Peptide - NP_001278351
swissprot - A5WWM0
swissprot - A0A0R4IPK7
ZFIN ID - ZDB-GENE-040426-1235
Ensembl - ENSDARG00000069175
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vps4a / vacuolar protein sorting 4a homolog A (S. cerevisiae) / Q8VEJ9* / Q9UN37* / AC026464.4* / vacuolar protein sorting 4A* / vacuolar protein sorting 4 homolog A*ENSDARG0000003011477
katnal1 / katanin p60 subunit A-like 1 / Q9BW62* / katanin catalytic subunit A1 like 1*ENSDARG0000009915636
katna1 / Q5RII9 / katanin p60 (ATPase containing) subunit A 1 / O75449* / katanin catalytic subunit A1*ENSDARG0000002182735
katnal2 / katanin p60 subunit A-like 2 / Q8IYT4* / Q9D3R6* / katanin catalytic subunit A1 like 2* / Katanin p60 ATPase-containing subunit A-like 2 *ENSDARG0000001227530
si:dkey-185p13.1 / VPS4B* / P46467* / O75351* / vacuolar protein sorting 4B* / vacuolar protein sorting 4 homolog B*ENSDARG000000958378


Protein motifs (from Interpro)
Interpro ID Name
 IPR003593  AAA+ ATPase domain
 IPR003959  ATPase, AAA-type, core
 IPR003960  ATPase, AAA-type, conserved site
 IPR007330  MIT
 IPR015415  Vps4 oligomerisation, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042476 odontogenesis IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000694 ceratobranchial 5 tooth ceratobranchial 5 tooth decreased size , abnormal
ceratobranchial 5 tooth decreased amount , abnormal
Show

 ZFA:0001153 tooth placode tooth placode spatial pattern , abnormal
tooth placode absent , abnormal
tooth placode decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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