ENSDARG00000099156


Danio rerio

Features
Gene ID: ENSDARG00000099156
  
Biological name :katnal1
  
Synonyms : katanin p60 subunit A-like 1 / katnal1
  
Possible biological names infered from orthology : Gm42791 / katanin catalytic subunit A1 like 1 / Katanin p60 ATPase-containing subunit A-like 1 / Q8K0T4 / Q9BW62
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 36037977
Gene end: 36063414
  
Corresponding Affymetrix probe sets: Dr.11082.1.A1_at (Zebrafish Array)   NM_001007431_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000131532
NCBI entrez gene - 492790     See in Manteia.
RefSeq - NM_001007431
RefSeq Peptide - NP_001007432
swissprot - A0A0R4IB19
ZFIN ID - ZDB-GENE-041114-141
Ensembl - ENSDARG00000099156
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KATNAL1ENSGALG00000017083Gallus gallus
 Q9BW62ENSG00000102781Homo sapiens
 Gm42791ENSMUSG00000106892Mus musculus
 Q8K0T4ENSMUSG00000041298Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
katna1 / Q5RII9 / katanin p60 (ATPase containing) subunit A 1 / O75449* / katanin catalytic subunit A1*ENSDARG0000002182767
vps4b / vacuolar protein sorting 4b homolog B (S. cerevisiae)ENSDARG0000006917532
katnal2 / katanin p60 subunit A-like 2 / Q8IYT4* / Q9D3R6* / katanin catalytic subunit A1 like 2* / Katanin p60 ATPase-containing subunit A-like 2 *ENSDARG0000001227530
vps4a / vacuolar protein sorting 4a homolog A (S. cerevisiae) / Q8VEJ9* / Q9UN37* / AC026464.4* / vacuolar protein sorting 4A* / vacuolar protein sorting 4 homolog A*ENSDARG0000003011430
si:dkey-185p13.1 / VPS4B* / P46467* / O75351* / vacuolar protein sorting 4B* / vacuolar protein sorting 4 homolog B*ENSDARG000000958374


Protein motifs (from Interpro)
Interpro ID Name
 IPR003593  AAA+ ATPase domain
 IPR003959  ATPase, AAA-type, core
 IPR003960  ATPase, AAA-type, conserved site
 IPR015415  Vps4 oligomerisation, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR028594  Katanin p60 subunit A-like 1, chordates
 IPR028596  Katanin p60 subunit A1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0051013 microtubule severing IEA
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0000922 spindle pole IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008017 microtubule binding IEA
 molecular_functionGO:0008568 microtubule-severing ATPase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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