ENSDARG00000069692


Danio rerio

Features
Gene ID: ENSDARG00000069692
  
Biological name :col7a1l
  
Synonyms : col7a1l / collagen type VII alpha 1-like
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 15889437
Gene end: 15966260
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000139596
Ensembl peptide - ENSDARP00000092365
Ensembl peptide - ENSDARP00000118733
swissprot - A0A0R4ITJ5
swissprot - F1Q960
swissprot - F1QKQ2
ZFIN ID - ZDB-GENE-030131-9861
Ensembl - ENSDARG00000069692
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col7a1 / collagen, type VII, alpha 1 / Q63870* / Q02388* / Collagen alpha-1(VII) chain * / collagen type VII alpha 1 chain*ENSDARG0000002172033
col14a1a / collagen, type XIV, alpha 1a / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG0000000576219
col12a1b / collagen, type XII, alpha 1b / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain*ENSDARG0000001960119
col12a1a / collagen, type XII, alpha 1a / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain*ENSDARG0000007832217
col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSDARG0000007713913
col6a4a / collagen, type VI, alpha 4a / A2AX52* / Col6a4* / Collagen alpha-4(VI) chain *ENSDARG0000007975212
si:ch211-62a1.3 / COL6A5* / COL6A6* / A6NMZ7* / A8TX70* / Q8C6K9* / Collagen alpha-6(VI) chain * / collagen type VI alpha 5 chain* / collagen type VI alpha 6 chain*ENSDARG000001124199
col14a1b / collagen, type XIV, alpha 1b / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG000000766238
vwa2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7*ENSDARG000000754416
ch1073-291c23.1 / VIT* / Q6UXI7* / Q8VHI5* / vitrin*ENSDARG000000636314
col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSDARG000000959154
coch / coagulation factor C homolog, cochlin (Limulus polyphemus) / O43405* / Q62507* / cochlin*ENSDARG000000240323


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr