ENSDARG00000021720


Danio rerio

Features
Gene ID: ENSDARG00000021720
  
Biological name :col7a1
  
Synonyms : col7a1 / collagen, type VII, alpha 1
  
Possible biological names infered from orthology : Collagen alpha-1(VII) chain / collagen type VII alpha 1 chain / Q02388 / Q63870
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 40184235
Gene end: 40312091
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000129718
Ensembl peptide - ENSDARP00000029446
Ensembl peptide - ENSDARP00000128470
swissprot - E7FA40
swissprot - X1WE19
swissprot - X1WHK5
ZFIN ID - ZDB-GENE-030131-2427
Ensembl - ENSDARG00000021720
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000005811Gallus gallus
 COL7A1ENSG00000114270Homo sapiens
 Col7a1ENSMUSG00000025650Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col7a1l / collagen type VII alpha 1-likeENSDARG0000006969225
col14a1a / collagen, type XIV, alpha 1a / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG0000000576215
col12a1b / collagen, type XII, alpha 1b / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain*ENSDARG0000001960115
col12a1a / collagen, type XII, alpha 1a / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain*ENSDARG0000007832214
col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSDARG0000007713913
col6a4a / collagen, type VI, alpha 4a / A2AX52* / Col6a4* / Collagen alpha-4(VI) chain *ENSDARG0000007975213
si:ch211-62a1.3 / COL6A5* / COL6A6* / A6NMZ7* / A8TX70* / Q8C6K9* / Collagen alpha-6(VI) chain * / collagen type VI alpha 5 chain* / collagen type VI alpha 6 chain*ENSDARG000001124199
col14a1b / collagen, type XIV, alpha 1b / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG000000766236
vwa2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7*ENSDARG000000754415
ch1073-291c23.1 / VIT* / Q6UXI7* / Q8VHI5* / vitrin*ENSDARG000000636313
col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSDARG000000959153
coch / coagulation factor C homolog, cochlin (Limulus polyphemus) / O43405* / Q62507* / cochlin*ENSDARG000000240322


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013783  Immunoglobulin-like fold
 IPR020901  Proteinase inhibitor I2, Kunitz, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
COPII-mediated vesicle transport
Integrin cell surface interactions
Anchoring fibril formation
Laminin interactions
Cargo concentration in the ER
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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